miRNA display CGI


Results 61 - 80 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29561 5' -62.1 NC_006151.1 + 1848 0.67 0.542357
Target:  5'- aGGGGAccgaggcCGcCGCCGCGG-ACGCagAGGa -3'
miRNA:   3'- -CCCCU-------GC-GCGGCGUCgUGCGagUCCa -5'
29561 5' -62.1 NC_006151.1 + 113522 0.67 0.533742
Target:  5'- uGGcGGACGCGCgcuuccuggCGCugauGCGCGCcgCGGGc -3'
miRNA:   3'- -CC-CCUGCGCG---------GCGu---CGUGCGa-GUCCa -5'
29561 5' -62.1 NC_006151.1 + 61305 0.67 0.533742
Target:  5'- -cGGGCGCGUCGCGcuGCAgGUcCAGGg -3'
miRNA:   3'- ccCCUGCGCGGCGU--CGUgCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 39149 0.67 0.533742
Target:  5'- uGGGAccCGCGCCGCGGCGgccucucggcgcUGCUCGc-- -3'
miRNA:   3'- cCCCU--GCGCGGCGUCGU------------GCGAGUcca -5'
29561 5' -62.1 NC_006151.1 + 111837 0.67 0.562629
Target:  5'- -uGGAagacgcacCGCGUCGgGGgGCGCUCGGGg -3'
miRNA:   3'- ccCCU--------GCGCGGCgUCgUGCGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 118156 0.67 0.562629
Target:  5'- cGGcGGugGCGCCGCuGGUGCGCggccugaccgUCgAGGc -3'
miRNA:   3'- -CC-CCugCGCGGCG-UCGUGCG----------AG-UCCa -5'
29561 5' -62.1 NC_006151.1 + 30760 0.67 0.582121
Target:  5'- cGGGGCGgGg-GCAGCACucagcgaagGCUCAGGg -3'
miRNA:   3'- cCCCUGCgCggCGUCGUG---------CGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 88606 0.67 0.582121
Target:  5'- -aGGACGgGC---GGCGCGCUCAGGc -3'
miRNA:   3'- ccCCUGCgCGgcgUCGUGCGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 131051 0.67 0.581143
Target:  5'- cGGGGcCGgaggccgucuccaUGCCGCggagGGCGCGCgaCAGGUa -3'
miRNA:   3'- -CCCCuGC-------------GCGGCG----UCGUGCGa-GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 127864 0.67 0.580165
Target:  5'- aGGGGGCGCcgcccGCCGCcguccaccuccAGCucgucguccgaGCUCGGGg -3'
miRNA:   3'- -CCCCUGCG-----CGGCG-----------UCGug---------CGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 129091 0.67 0.572355
Target:  5'- cGGGGGCGUaguuGCUGC-GCACGagcgcCAGGg -3'
miRNA:   3'- -CCCCUGCG----CGGCGuCGUGCga---GUCCa -5'
29561 5' -62.1 NC_006151.1 + 103907 0.67 0.572355
Target:  5'- uGGaGGugGCGCgCGCGGC-CGC-CGuGGa -3'
miRNA:   3'- -CC-CCugCGCG-GCGUCGuGCGaGU-CCa -5'
29561 5' -62.1 NC_006151.1 + 83360 0.67 0.572355
Target:  5'- --cGGCGCGCgCGCgGGCGCGCaggcgccgCAGGUg -3'
miRNA:   3'- cccCUGCGCG-GCG-UCGUGCGa-------GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 77939 0.67 0.572355
Target:  5'- gGGcGGGCGCGCgGCcccCACGCUgAGcGUg -3'
miRNA:   3'- -CC-CCUGCGCGgCGuc-GUGCGAgUC-CA- -5'
29561 5' -62.1 NC_006151.1 + 61767 0.67 0.572355
Target:  5'- cGGGGGCcgugGUGCUGCGGCGCGaggCcGGc -3'
miRNA:   3'- -CCCCUG----CGCGGCGUCGUGCga-GuCCa -5'
29561 5' -62.1 NC_006151.1 + 38186 0.67 0.572355
Target:  5'- --cGugGCGCCGCuGGUGCGCUaCAGcGUg -3'
miRNA:   3'- cccCugCGCGGCG-UCGUGCGA-GUC-CA- -5'
29561 5' -62.1 NC_006151.1 + 84366 0.67 0.572355
Target:  5'- cGGcGGugauCGCGaUCGCGGCGCGCggggacgggCGGGg -3'
miRNA:   3'- -CC-CCu---GCGC-GGCGUCGUGCGa--------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 102227 0.67 0.57138
Target:  5'- cGGGGAgGCGCCGUGcGCcgucgccGCGCUCu--- -3'
miRNA:   3'- -CCCCUgCGCGGCGU-CG-------UGCGAGucca -5'
29561 5' -62.1 NC_006151.1 + 133793 0.67 0.57138
Target:  5'- gGGGGAgGCGUgcaGCAuccggguGCACGUcCGGGUg -3'
miRNA:   3'- -CCCCUgCGCGg--CGU-------CGUGCGaGUCCA- -5'
29561 5' -62.1 NC_006151.1 + 127384 0.67 0.562629
Target:  5'- gGGGGugGCggggGCCGCGGC-CGagucgaCGGGa -3'
miRNA:   3'- -CCCCugCG----CGGCGUCGuGCga----GUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.