miRNA display CGI


Results 81 - 100 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29561 5' -62.1 NC_006151.1 + 102227 0.67 0.57138
Target:  5'- cGGGGAgGCGCCGUGcGCcgucgccGCGCUCu--- -3'
miRNA:   3'- -CCCCUgCGCGGCGU-CG-------UGCGAGucca -5'
29561 5' -62.1 NC_006151.1 + 84366 0.67 0.572355
Target:  5'- cGGcGGugauCGCGaUCGCGGCGCGCggggacgggCGGGg -3'
miRNA:   3'- -CC-CCu---GCGC-GGCGUCGUGCGa--------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 38186 0.67 0.572355
Target:  5'- --cGugGCGCCGCuGGUGCGCUaCAGcGUg -3'
miRNA:   3'- cccCugCGCGGCG-UCGUGCGA-GUC-CA- -5'
29561 5' -62.1 NC_006151.1 + 61767 0.67 0.572355
Target:  5'- cGGGGGCcgugGUGCUGCGGCGCGaggCcGGc -3'
miRNA:   3'- -CCCCUG----CGCGGCGUCGUGCga-GuCCa -5'
29561 5' -62.1 NC_006151.1 + 15894 0.68 0.514779
Target:  5'- gGGGGACGCGCgccccgaCGCGGCcCGCcgccgccccgugaggCGGGc -3'
miRNA:   3'- -CCCCUGCGCG-------GCGUCGuGCGa--------------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 4258 0.68 0.514779
Target:  5'- aGGGcagcaGGCGCucgaggacGCCGCGGCAgGC-CAGGa -3'
miRNA:   3'- -CCC-----CUGCG--------CGGCGUCGUgCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 141791 0.68 0.5054
Target:  5'- cGGGGACGCGggucggucCCGCcccgagGGCACgggccgGUUCGGGg -3'
miRNA:   3'- -CCCCUGCGC--------GGCG------UCGUG------CGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 103758 0.68 0.5054
Target:  5'- aGGaGCGCGCCGCGGCGCuGCgcgagUCGGa- -3'
miRNA:   3'- cCCcUGCGCGGCGUCGUG-CG-----AGUCca -5'
29561 5' -62.1 NC_006151.1 + 3869 0.68 0.5054
Target:  5'- aGGGGGCGCccGCCGCcgccGGCgccgGCGCU-GGGa -3'
miRNA:   3'- -CCCCUGCG--CGGCG----UCG----UGCGAgUCCa -5'
29561 5' -62.1 NC_006151.1 + 68767 0.68 0.5026
Target:  5'- cGGcGGugGCGCgCGCGGCgagguGCGCcgccgcggccgucaUCAGGc -3'
miRNA:   3'- -CC-CCugCGCG-GCGUCG-----UGCG--------------AGUCCa -5'
29561 5' -62.1 NC_006151.1 + 104970 0.68 0.496095
Target:  5'- cGGGuGACGcCGCCGcCGGCcuCGCUCAa-- -3'
miRNA:   3'- -CCC-CUGC-GCGGC-GUCGu-GCGAGUcca -5'
29561 5' -62.1 NC_006151.1 + 82180 0.68 0.514779
Target:  5'- cGGGGGCGCGaucaUGC-GCAucCGCUCGGcGg -3'
miRNA:   3'- -CCCCUGCGCg---GCGuCGU--GCGAGUC-Ca -5'
29561 5' -62.1 NC_006151.1 + 90703 0.68 0.522333
Target:  5'- cGGcGGACGCGCCcgccccgcaggcgGCGGCgacgguggcggcgGCGCccUCGGGg -3'
miRNA:   3'- -CC-CCUGCGCGG-------------CGUCG-------------UGCG--AGUCCa -5'
29561 5' -62.1 NC_006151.1 + 20461 0.68 0.524228
Target:  5'- gGGGGugGCGCCGgucccccgggGGgGCGCggGGGUc -3'
miRNA:   3'- -CCCCugCGCGGCg---------UCgUGCGagUCCA- -5'
29561 5' -62.1 NC_006151.1 + 58422 0.68 0.524228
Target:  5'- -uGGGCGUGCgGCAGCcACGcCUC-GGUg -3'
miRNA:   3'- ccCCUGCGCGgCGUCG-UGC-GAGuCCA- -5'
29561 5' -62.1 NC_006151.1 + 76708 0.68 0.524228
Target:  5'- -cGGGCGCGCCGCGGC-CGCc----- -3'
miRNA:   3'- ccCCUGCGCGGCGUCGuGCGagucca -5'
29561 5' -62.1 NC_006151.1 + 63514 0.68 0.524228
Target:  5'- uGGGGGCGCGC---GGgGCGgUCGGGg -3'
miRNA:   3'- -CCCCUGCGCGgcgUCgUGCgAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 99680 0.68 0.524228
Target:  5'- uGGGGccuGCGCGCCGaCGGCGC---CGGGg -3'
miRNA:   3'- -CCCC---UGCGCGGC-GUCGUGcgaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 133312 0.68 0.524228
Target:  5'- cGGGGGCgGC-CCGUgucgaGGCGCGC-CGGGc -3'
miRNA:   3'- -CCCCUG-CGcGGCG-----UCGUGCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 55446 0.68 0.496095
Target:  5'- cGGGACcgGCGCCGcCGGCccCGC-CGGGg -3'
miRNA:   3'- cCCCUG--CGCGGC-GUCGu-GCGaGUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.