miRNA display CGI


Results 101 - 120 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29561 5' -62.1 NC_006151.1 + 99680 0.68 0.524228
Target:  5'- uGGGGccuGCGCGCCGaCGGCGC---CGGGg -3'
miRNA:   3'- -CCCC---UGCGCGGC-GUCGUGcgaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 63514 0.68 0.524228
Target:  5'- uGGGGGCGCGC---GGgGCGgUCGGGg -3'
miRNA:   3'- -CCCCUGCGCGgcgUCgUGCgAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 76708 0.68 0.524228
Target:  5'- -cGGGCGCGCCGCGGC-CGCc----- -3'
miRNA:   3'- ccCCUGCGCGGCGUCGuGCGagucca -5'
29561 5' -62.1 NC_006151.1 + 58422 0.68 0.524228
Target:  5'- -uGGGCGUGCgGCAGCcACGcCUC-GGUg -3'
miRNA:   3'- ccCCUGCGCGgCGUCG-UGC-GAGuCCA- -5'
29561 5' -62.1 NC_006151.1 + 20461 0.68 0.524228
Target:  5'- gGGGGugGCGCCGgucccccgggGGgGCGCggGGGUc -3'
miRNA:   3'- -CCCCugCGCGGCg---------UCgUGCGagUCCA- -5'
29561 5' -62.1 NC_006151.1 + 141791 0.68 0.5054
Target:  5'- cGGGGACGCGggucggucCCGCcccgagGGCACgggccgGUUCGGGg -3'
miRNA:   3'- -CCCCUGCGC--------GGCG------UCGUG------CGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 4258 0.68 0.514779
Target:  5'- aGGGcagcaGGCGCucgaggacGCCGCGGCAgGC-CAGGa -3'
miRNA:   3'- -CCC-----CUGCG--------CGGCGUCGUgCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 15894 0.68 0.514779
Target:  5'- gGGGGACGCGCgccccgaCGCGGCcCGCcgccgccccgugaggCGGGc -3'
miRNA:   3'- -CCCCUGCGCG-------GCGUCGuGCGa--------------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 82180 0.68 0.514779
Target:  5'- cGGGGGCGCGaucaUGC-GCAucCGCUCGGcGg -3'
miRNA:   3'- -CCCCUGCGCg---GCGuCGU--GCGAGUC-Ca -5'
29561 5' -62.1 NC_006151.1 + 90703 0.68 0.522333
Target:  5'- cGGcGGACGCGCCcgccccgcaggcgGCGGCgacgguggcggcgGCGCccUCGGGg -3'
miRNA:   3'- -CC-CCUGCGCGG-------------CGUCG-------------UGCG--AGUCCa -5'
29561 5' -62.1 NC_006151.1 + 111755 0.69 0.454357
Target:  5'- aGGGGACGUggGCCcagcugcgaugaggcGCAGCACGUacuccagCGGGa -3'
miRNA:   3'- -CCCCUGCG--CGG---------------CGUCGUGCGa------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 3432 0.69 0.458803
Target:  5'- cGGGACGCggcggaaGCCGCcgucgGGCGCgggguGCUCGGGc -3'
miRNA:   3'- cCCCUGCG-------CGGCG-----UCGUG-----CGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 84426 0.69 0.459695
Target:  5'- aGGcGGCGCGCgGCGGCGCGCg----- -3'
miRNA:   3'- cCC-CUGCGCGgCGUCGUGCGagucca -5'
29561 5' -62.1 NC_006151.1 + 135105 0.69 0.459695
Target:  5'- gGGcGGGCG-GCgGUAGCGCGCggggCGGGc -3'
miRNA:   3'- -CC-CCUGCgCGgCGUCGUGCGa---GUCCa -5'
29561 5' -62.1 NC_006151.1 + 17400 0.69 0.459695
Target:  5'- cGGGGCGCGUgGC-GCGCgGCagCAGGg -3'
miRNA:   3'- cCCCUGCGCGgCGuCGUG-CGa-GUCCa -5'
29561 5' -62.1 NC_006151.1 + 25411 0.69 0.459695
Target:  5'- cGGGGGCGcCGCCGCcccacGCGCGCccgUCAu-- -3'
miRNA:   3'- -CCCCUGC-GCGGCGu----CGUGCG---AGUcca -5'
29561 5' -62.1 NC_006151.1 + 37317 0.69 0.459695
Target:  5'- cGGGcccccgccgaccGACGgGCCGCuGCucacccCGCUCGGGg -3'
miRNA:   3'- -CCC------------CUGCgCGGCGuCGu-----GCGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 81283 0.69 0.459695
Target:  5'- cGGGGAUcucggGCGCgGC-GCGCGCgaCGGGg -3'
miRNA:   3'- -CCCCUG-----CGCGgCGuCGUGCGa-GUCCa -5'
29561 5' -62.1 NC_006151.1 + 83853 0.69 0.468665
Target:  5'- cGGaGGAUGCGCauccCGGCGCGCUucCGGGc -3'
miRNA:   3'- -CC-CCUGCGCGgc--GUCGUGCGA--GUCCa -5'
29561 5' -62.1 NC_006151.1 + 19443 0.69 0.450817
Target:  5'- uGGGcggcucGCGCuggaGCCGCGGCAC-CUCGGGc -3'
miRNA:   3'- cCCC------UGCG----CGGCGUCGUGcGAGUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.