Results 121 - 140 of 199 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29561 | 5' | -62.1 | NC_006151.1 | + | 117550 | 0.69 | 0.423909 |
Target: 5'- cGGcGACGCGCCGCGGCcagaaGgGCUCcccgcggAGGa -3' miRNA: 3'- cCC-CUGCGCGGCGUCG-----UgCGAG-------UCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 3695 | 0.69 | 0.442033 |
Target: 5'- -cGGGCGCGCgGCGcuucuucuuGCGcCGCUCGGGc -3' miRNA: 3'- ccCCUGCGCGgCGU---------CGU-GCGAGUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 105502 | 0.69 | 0.445535 |
Target: 5'- aGGaGGACGUGCgCgagcucgaccgcaugGCGGCGCGCaUCGGGc -3' miRNA: 3'- -CC-CCUGCGCG-G---------------CGUCGUGCG-AGUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 81370 | 0.69 | 0.449934 |
Target: 5'- cGGcGGGCgccagcgcgagccGCGCCGCGGCGC-C-CAGGUu -3' miRNA: 3'- -CC-CCUG-------------CGCGGCGUCGUGcGaGUCCA- -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 137412 | 0.69 | 0.468665 |
Target: 5'- gGGGGGCGCccucGCCGCcGC-CGCg-GGGUc -3' miRNA: 3'- -CCCCUGCG----CGGCGuCGuGCGagUCCA- -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 83853 | 0.69 | 0.468665 |
Target: 5'- cGGaGGAUGCGCauccCGGCGCGCUucCGGGc -3' miRNA: 3'- -CC-CCUGCGCGgc--GUCGUGCGA--GUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 81283 | 0.69 | 0.459695 |
Target: 5'- cGGGGAUcucggGCGCgGC-GCGCGCgaCGGGg -3' miRNA: 3'- -CCCCUG-----CGCGgCGuCGUGCGa-GUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 37317 | 0.69 | 0.459695 |
Target: 5'- cGGGcccccgccgaccGACGgGCCGCuGCucacccCGCUCGGGg -3' miRNA: 3'- -CCC------------CUGCgCGGCGuCGu-----GCGAGUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 25411 | 0.69 | 0.459695 |
Target: 5'- cGGGGGCGcCGCCGCcccacGCGCGCccgUCAu-- -3' miRNA: 3'- -CCCCUGC-GCGGCGu----CGUGCG---AGUcca -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 17400 | 0.69 | 0.459695 |
Target: 5'- cGGGGCGCGUgGC-GCGCgGCagCAGGg -3' miRNA: 3'- cCCCUGCGCGgCGuCGUG-CGa-GUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 135105 | 0.69 | 0.459695 |
Target: 5'- gGGcGGGCG-GCgGUAGCGCGCggggCGGGc -3' miRNA: 3'- -CC-CCUGCgCGgCGUCGUGCGa---GUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 84426 | 0.69 | 0.459695 |
Target: 5'- aGGcGGCGCGCgGCGGCGCGCg----- -3' miRNA: 3'- cCC-CUGCGCGgCGUCGUGCGagucca -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 3432 | 0.69 | 0.458803 |
Target: 5'- cGGGACGCggcggaaGCCGCcgucgGGCGCgggguGCUCGGGc -3' miRNA: 3'- cCCCUGCG-------CGGCG-----UCGUG-----CGAGUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 111755 | 0.69 | 0.454357 |
Target: 5'- aGGGGACGUggGCCcagcugcgaugaggcGCAGCACGUacuccagCGGGa -3' miRNA: 3'- -CCCCUGCG--CGG---------------CGUCGUGCGa------GUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 19443 | 0.69 | 0.450817 |
Target: 5'- uGGGcggcucGCGCuggaGCCGCGGCAC-CUCGGGc -3' miRNA: 3'- cCCC------UGCG----CGGCGUCGUGcGAGUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 104030 | 0.7 | 0.416279 |
Target: 5'- aGGuGGA-GCGCgCGCAGCGCcaGCUCuGGg -3' miRNA: 3'- -CC-CCUgCGCG-GCGUCGUG--CGAGuCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 8242 | 0.7 | 0.416279 |
Target: 5'- cGGGGAgG-GCCGggcCGGCGCGC-CGGGa -3' miRNA: 3'- -CCCCUgCgCGGC---GUCGUGCGaGUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 26361 | 0.7 | 0.416279 |
Target: 5'- cGGGcCGCGUCGgGGCGCGCgucccccggCGGGc -3' miRNA: 3'- cCCCuGCGCGGCgUCGUGCGa--------GUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 128260 | 0.7 | 0.416279 |
Target: 5'- uGGuGGAagcggcacUGCGCgCGCAGCGcCGCgcgCAGGUa -3' miRNA: 3'- -CC-CCU--------GCGCG-GCGUCGU-GCGa--GUCCA- -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 99466 | 0.7 | 0.415437 |
Target: 5'- cGGGGACGUGaCgGCGGCGCugggGCUCcccgagaAGGg -3' miRNA: 3'- -CCCCUGCGC-GgCGUCGUG----CGAG-------UCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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