miRNA display CGI


Results 41 - 60 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29561 5' -62.1 NC_006151.1 + 31622 0.71 0.330182
Target:  5'- cGGGGAugcCGCGCCgGCAcgagcGCACGCgggcgcgCGGGg -3'
miRNA:   3'- -CCCCU---GCGCGG-CGU-----CGUGCGa------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 656 0.71 0.330182
Target:  5'- cGGGGCGCgGCCGgGGCGgGCUCcgcGGa -3'
miRNA:   3'- cCCCUGCG-CGGCgUCGUgCGAGu--CCa -5'
29561 5' -62.1 NC_006151.1 + 142323 0.71 0.323038
Target:  5'- gGGGGcccGCGCGCuCGCGGCGCccGCUUuGGa -3'
miRNA:   3'- -CCCC---UGCGCG-GCGUCGUG--CGAGuCCa -5'
29561 5' -62.1 NC_006151.1 + 56668 0.71 0.352308
Target:  5'- uGGuGGACgacgGCGCCGC-GCGCGCUCAc-- -3'
miRNA:   3'- -CC-CCUG----CGCGGCGuCGUGCGAGUcca -5'
29561 5' -62.1 NC_006151.1 + 4153 0.71 0.337442
Target:  5'- cGGGGAuCGCGUCGCGGaGCGCgagCAGc- -3'
miRNA:   3'- -CCCCU-GCGCGGCGUCgUGCGa--GUCca -5'
29561 5' -62.1 NC_006151.1 + 85647 0.71 0.344818
Target:  5'- cGGGGACGCGcCCGCcuCGCGCagCGGcGa -3'
miRNA:   3'- -CCCCUGCGC-GGCGucGUGCGa-GUC-Ca -5'
29561 5' -62.1 NC_006151.1 + 121183 0.71 0.352308
Target:  5'- -cGGcCGUGCUGCA-CGCGCUCGGGg -3'
miRNA:   3'- ccCCuGCGCGGCGUcGUGCGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 104030 0.7 0.416279
Target:  5'- aGGuGGA-GCGCgCGCAGCGCcaGCUCuGGg -3'
miRNA:   3'- -CC-CCUgCGCG-GCGUCGUG--CGAGuCCa -5'
29561 5' -62.1 NC_006151.1 + 99466 0.7 0.415437
Target:  5'- cGGGGACGUGaCgGCGGCGCugggGCUCcccgagaAGGg -3'
miRNA:   3'- -CCCCUGCGC-GgCGUCGUG----CGAG-------UCCa -5'
29561 5' -62.1 NC_006151.1 + 140213 0.7 0.407901
Target:  5'- cGGGGGCgGUGCUGCAgaaccuGCGCcugaaGCUCGGGc -3'
miRNA:   3'- -CCCCUG-CGCGGCGU------CGUG-----CGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 102621 0.7 0.407901
Target:  5'- -cGGGCGCGCgaCGUgAGCGCGCUCgAGGc -3'
miRNA:   3'- ccCCUGCGCG--GCG-UCGUGCGAG-UCCa -5'
29561 5' -62.1 NC_006151.1 + 97242 0.7 0.407901
Target:  5'- cGGGuGGCGCgGCCGC-GCAUG-UCGGGg -3'
miRNA:   3'- -CCC-CUGCG-CGGCGuCGUGCgAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 8242 0.7 0.416279
Target:  5'- cGGGGAgG-GCCGggcCGGCGCGC-CGGGa -3'
miRNA:   3'- -CCCCUgCgCGGC---GUCGUGCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 128260 0.7 0.416279
Target:  5'- uGGuGGAagcggcacUGCGCgCGCAGCGcCGCgcgCAGGUa -3'
miRNA:   3'- -CC-CCU--------GCGCG-GCGUCGU-GCGa--GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 134738 0.7 0.416279
Target:  5'- cGGGACuuuguCGCCccgaGCAGCGCGCgCGGGg -3'
miRNA:   3'- cCCCUGc----GCGG----CGUCGUGCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 73384 0.7 0.399628
Target:  5'- cGGGGGCGCGCagCGCGGC-CGC-CGcGUa -3'
miRNA:   3'- -CCCCUGCGCG--GCGUCGuGCGaGUcCA- -5'
29561 5' -62.1 NC_006151.1 + 2015 0.7 0.383409
Target:  5'- aGGGGGCGCcCCGCucAGCGgaGCagCAGGUa -3'
miRNA:   3'- -CCCCUGCGcGGCG--UCGUg-CGa-GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 13397 0.7 0.389036
Target:  5'- cGGGGACGCGCCGgCcaaugggggagccgGGCcCGCgucccCGGGg -3'
miRNA:   3'- -CCCCUGCGCGGC-G--------------UCGuGCGa----GUCCa -5'
29561 5' -62.1 NC_006151.1 + 13957 0.7 0.38261
Target:  5'- cGGGGACGCGCCGgCcaugggggagccgGGCcCGCgucccCGGGg -3'
miRNA:   3'- -CCCCUGCGCGGC-G-------------UCGuGCGa----GUCCa -5'
29561 5' -62.1 NC_006151.1 + 34594 0.7 0.391464
Target:  5'- uGGGGcgcccucggagcGCGCGCCG-AGCGCGaggcgCGGGUg -3'
miRNA:   3'- -CCCC------------UGCGCGGCgUCGUGCga---GUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.