miRNA display CGI


Results 61 - 80 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29561 5' -62.1 NC_006151.1 + 26361 0.7 0.416279
Target:  5'- cGGGcCGCGUCGgGGCGCGCgucccccggCGGGc -3'
miRNA:   3'- cCCCuGCGCGGCgUCGUGCGa--------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 73384 0.7 0.399628
Target:  5'- cGGGGGCGCGCagCGCGGC-CGC-CGcGUa -3'
miRNA:   3'- -CCCCUGCGCG--GCGUCGuGCGaGUcCA- -5'
29561 5' -62.1 NC_006151.1 + 97242 0.7 0.407901
Target:  5'- cGGGuGGCGCgGCCGC-GCAUG-UCGGGg -3'
miRNA:   3'- -CCC-CUGCG-CGGCGuCGUGCgAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 100059 0.7 0.375465
Target:  5'- cGGGGuCGUGCgCGCGGC-CGCcgAGGUg -3'
miRNA:   3'- -CCCCuGCGCG-GCGUCGuGCGagUCCA- -5'
29561 5' -62.1 NC_006151.1 + 81283 0.69 0.459695
Target:  5'- cGGGGAUcucggGCGCgGC-GCGCGCgaCGGGg -3'
miRNA:   3'- -CCCCUG-----CGCGgCGuCGUGCGa-GUCCa -5'
29561 5' -62.1 NC_006151.1 + 81532 0.69 0.433348
Target:  5'- cGGcGGC-CGCgGCGGCGCGCUCcgcGGUg -3'
miRNA:   3'- cCC-CUGcGCGgCGUCGUGCGAGu--CCA- -5'
29561 5' -62.1 NC_006151.1 + 135105 0.69 0.459695
Target:  5'- gGGcGGGCG-GCgGUAGCGCGCggggCGGGc -3'
miRNA:   3'- -CC-CCUGCgCGgCGUCGUGCGa---GUCCa -5'
29561 5' -62.1 NC_006151.1 + 111755 0.69 0.454357
Target:  5'- aGGGGACGUggGCCcagcugcgaugaggcGCAGCACGUacuccagCGGGa -3'
miRNA:   3'- -CCCCUGCG--CGG---------------CGUCGUGCGa------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 20134 0.69 0.433348
Target:  5'- gGGGGGCggGCGCCGCgggggcGGCGCGUggaccgcCGGGc -3'
miRNA:   3'- -CCCCUG--CGCGGCG------UCGUGCGa------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 37719 0.69 0.433348
Target:  5'- cGGGGACGCcaugGCCGCccaGGaCcCGCUCuGGg -3'
miRNA:   3'- -CCCCUGCG----CGGCG---UC-GuGCGAGuCCa -5'
29561 5' -62.1 NC_006151.1 + 66546 0.69 0.433348
Target:  5'- cGGGGGCGCG-CGCGGCcGCGCcgCcguGGa -3'
miRNA:   3'- -CCCCUGCGCgGCGUCG-UGCGa-Gu--CCa -5'
29561 5' -62.1 NC_006151.1 + 81370 0.69 0.449934
Target:  5'- cGGcGGGCgccagcgcgagccGCGCCGCGGCGC-C-CAGGUu -3'
miRNA:   3'- -CC-CCUG-------------CGCGGCGUCGUGcGaGUCCA- -5'
29561 5' -62.1 NC_006151.1 + 84681 0.69 0.44116
Target:  5'- aGGuGGACGagcaGCUGCGGC-CGCUggagcggCAGGUg -3'
miRNA:   3'- -CC-CCUGCg---CGGCGUCGuGCGA-------GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 19443 0.69 0.450817
Target:  5'- uGGGcggcucGCGCuggaGCCGCGGCAC-CUCGGGc -3'
miRNA:   3'- cCCC------UGCG----CGGCGUCGUGcGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 17400 0.69 0.459695
Target:  5'- cGGGGCGCGUgGC-GCGCgGCagCAGGg -3'
miRNA:   3'- cCCCUGCGCGgCGuCGUG-CGa-GUCCa -5'
29561 5' -62.1 NC_006151.1 + 3695 0.69 0.442033
Target:  5'- -cGGGCGCGCgGCGcuucuucuuGCGcCGCUCGGGc -3'
miRNA:   3'- ccCCUGCGCGgCGU---------CGU-GCGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 25411 0.69 0.459695
Target:  5'- cGGGGGCGcCGCCGCcccacGCGCGCccgUCAu-- -3'
miRNA:   3'- -CCCCUGC-GCGGCGu----CGUGCG---AGUcca -5'
29561 5' -62.1 NC_006151.1 + 84426 0.69 0.459695
Target:  5'- aGGcGGCGCGCgGCGGCGCGCg----- -3'
miRNA:   3'- cCC-CUGCGCGgCGUCGUGCGagucca -5'
29561 5' -62.1 NC_006151.1 + 3432 0.69 0.458803
Target:  5'- cGGGACGCggcggaaGCCGCcgucgGGCGCgggguGCUCGGGc -3'
miRNA:   3'- cCCCUGCG-------CGGCG-----UCGUG-----CGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 37317 0.69 0.459695
Target:  5'- cGGGcccccgccgaccGACGgGCCGCuGCucacccCGCUCGGGg -3'
miRNA:   3'- -CCC------------CUGCgCGGCGuCGu-----GCGAGUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.