miRNA display CGI


Results 81 - 100 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29561 5' -62.1 NC_006151.1 + 84681 0.69 0.44116
Target:  5'- aGGuGGACGagcaGCUGCGGC-CGCUggagcggCAGGUg -3'
miRNA:   3'- -CC-CCUGCg---CGGCGUCGuGCGA-------GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 105502 0.69 0.445535
Target:  5'- aGGaGGACGUGCgCgagcucgaccgcaugGCGGCGCGCaUCGGGc -3'
miRNA:   3'- -CC-CCUGCGCG-G---------------CGUCGUGCG-AGUCCa -5'
29561 5' -62.1 NC_006151.1 + 81370 0.69 0.449934
Target:  5'- cGGcGGGCgccagcgcgagccGCGCCGCGGCGC-C-CAGGUu -3'
miRNA:   3'- -CC-CCUG-------------CGCGGCGUCGUGcGaGUCCA- -5'
29561 5' -62.1 NC_006151.1 + 135105 0.69 0.459695
Target:  5'- gGGcGGGCG-GCgGUAGCGCGCggggCGGGc -3'
miRNA:   3'- -CC-CCUGCgCGgCGUCGUGCGa---GUCCa -5'
29561 5' -62.1 NC_006151.1 + 92684 0.69 0.424762
Target:  5'- cGGGGACGCGCgcuCGCcGCGCGC-CGa-- -3'
miRNA:   3'- -CCCCUGCGCG---GCGuCGUGCGaGUcca -5'
29561 5' -62.1 NC_006151.1 + 84426 0.69 0.459695
Target:  5'- aGGcGGCGCGCgGCGGCGCGCg----- -3'
miRNA:   3'- cCC-CUGCGCGgCGUCGUGCGagucca -5'
29561 5' -62.1 NC_006151.1 + 137412 0.69 0.468665
Target:  5'- gGGGGGCGCccucGCCGCcGC-CGCg-GGGUc -3'
miRNA:   3'- -CCCCUGCG----CGGCGuCGuGCGagUCCA- -5'
29561 5' -62.1 NC_006151.1 + 37317 0.69 0.459695
Target:  5'- cGGGcccccgccgaccGACGgGCCGCuGCucacccCGCUCGGGg -3'
miRNA:   3'- -CCC------------CUGCgCGGCGuCGu-----GCGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 25411 0.69 0.459695
Target:  5'- cGGGGGCGcCGCCGCcccacGCGCGCccgUCAu-- -3'
miRNA:   3'- -CCCCUGC-GCGGCGu----CGUGCG---AGUcca -5'
29561 5' -62.1 NC_006151.1 + 104970 0.68 0.496095
Target:  5'- cGGGuGACGcCGCCGcCGGCcuCGCUCAa-- -3'
miRNA:   3'- -CCC-CUGC-GCGGC-GUCGu-GCGAGUcca -5'
29561 5' -62.1 NC_006151.1 + 68767 0.68 0.5026
Target:  5'- cGGcGGugGCGCgCGCGGCgagguGCGCcgccgcggccgucaUCAGGc -3'
miRNA:   3'- -CC-CCugCGCG-GCGUCG-----UGCG--------------AGUCCa -5'
29561 5' -62.1 NC_006151.1 + 3869 0.68 0.5054
Target:  5'- aGGGGGCGCccGCCGCcgccGGCgccgGCGCU-GGGa -3'
miRNA:   3'- -CCCCUGCG--CGGCG----UCG----UGCGAgUCCa -5'
29561 5' -62.1 NC_006151.1 + 103758 0.68 0.5054
Target:  5'- aGGaGCGCGCCGCGGCGCuGCgcgagUCGGa- -3'
miRNA:   3'- cCCcUGCGCGGCGUCGUG-CG-----AGUCca -5'
29561 5' -62.1 NC_006151.1 + 141791 0.68 0.5054
Target:  5'- cGGGGACGCGggucggucCCGCcccgagGGCACgggccgGUUCGGGg -3'
miRNA:   3'- -CCCCUGCGC--------GGCG------UCGUG------CGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 4258 0.68 0.514779
Target:  5'- aGGGcagcaGGCGCucgaggacGCCGCGGCAgGC-CAGGa -3'
miRNA:   3'- -CCC-----CUGCG--------CGGCGUCGUgCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 15894 0.68 0.514779
Target:  5'- gGGGGACGCGCgccccgaCGCGGCcCGCcgccgccccgugaggCGGGc -3'
miRNA:   3'- -CCCCUGCGCG-------GCGUCGuGCGa--------------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 82180 0.68 0.514779
Target:  5'- cGGGGGCGCGaucaUGC-GCAucCGCUCGGcGg -3'
miRNA:   3'- -CCCCUGCGCg---GCGuCGU--GCGAGUC-Ca -5'
29561 5' -62.1 NC_006151.1 + 90703 0.68 0.522333
Target:  5'- cGGcGGACGCGCCcgccccgcaggcgGCGGCgacgguggcggcgGCGCccUCGGGg -3'
miRNA:   3'- -CC-CCUGCGCGG-------------CGUCG-------------UGCG--AGUCCa -5'
29561 5' -62.1 NC_006151.1 + 20461 0.68 0.524228
Target:  5'- gGGGGugGCGCCGgucccccgggGGgGCGCggGGGUc -3'
miRNA:   3'- -CCCCugCGCGGCg---------UCgUGCGagUCCA- -5'
29561 5' -62.1 NC_006151.1 + 58422 0.68 0.524228
Target:  5'- -uGGGCGUGCgGCAGCcACGcCUC-GGUg -3'
miRNA:   3'- ccCCUGCGCGgCGUCG-UGC-GAGuCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.