miRNA display CGI


Results 61 - 80 of 199 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29561 5' -62.1 NC_006151.1 + 8242 0.7 0.416279
Target:  5'- cGGGGAgG-GCCGggcCGGCGCGC-CGGGa -3'
miRNA:   3'- -CCCCUgCgCGGC---GUCGUGCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 26361 0.7 0.416279
Target:  5'- cGGGcCGCGUCGgGGCGCGCgucccccggCGGGc -3'
miRNA:   3'- cCCCuGCGCGGCgUCGUGCGa--------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 128260 0.7 0.416279
Target:  5'- uGGuGGAagcggcacUGCGCgCGCAGCGcCGCgcgCAGGUa -3'
miRNA:   3'- -CC-CCU--------GCGCG-GCGUCGU-GCGa--GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 134738 0.7 0.416279
Target:  5'- cGGGACuuuguCGCCccgaGCAGCGCGCgCGGGg -3'
miRNA:   3'- cCCCUGc----GCGG----CGUCGUGCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 117550 0.69 0.423909
Target:  5'- cGGcGACGCGCCGCGGCcagaaGgGCUCcccgcggAGGa -3'
miRNA:   3'- cCC-CUGCGCGGCGUCG-----UgCGAG-------UCCa -5'
29561 5' -62.1 NC_006151.1 + 83258 0.69 0.424762
Target:  5'- --cGuCGCGCCaGCGGCGCcccgaGCUCAGGUa -3'
miRNA:   3'- cccCuGCGCGG-CGUCGUG-----CGAGUCCA- -5'
29561 5' -62.1 NC_006151.1 + 92684 0.69 0.424762
Target:  5'- cGGGGACGCGCgcuCGCcGCGCGC-CGa-- -3'
miRNA:   3'- -CCCCUGCGCG---GCGuCGUGCGaGUcca -5'
29561 5' -62.1 NC_006151.1 + 68878 0.69 0.424762
Target:  5'- cGGGGCGCGCC-CGGCcACGUcgAGGa -3'
miRNA:   3'- cCCCUGCGCGGcGUCG-UGCGagUCCa -5'
29561 5' -62.1 NC_006151.1 + 56567 0.69 0.424762
Target:  5'- cGGGcGACGCGCCGCcGCccgACGggCuGGUg -3'
miRNA:   3'- -CCC-CUGCGCGGCGuCG---UGCgaGuCCA- -5'
29561 5' -62.1 NC_006151.1 + 88026 0.69 0.429902
Target:  5'- gGGGGAgGCGUCGUAGCGCuGCguguccucgaagaCGGGc -3'
miRNA:   3'- -CCCCUgCGCGGCGUCGUG-CGa------------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 20134 0.69 0.433348
Target:  5'- gGGGGGCggGCGCCGCgggggcGGCGCGUggaccgcCGGGc -3'
miRNA:   3'- -CCCCUG--CGCGGCG------UCGUGCGa------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 81532 0.69 0.433348
Target:  5'- cGGcGGC-CGCgGCGGCGCGCUCcgcGGUg -3'
miRNA:   3'- cCC-CUGcGCGgCGUCGUGCGAGu--CCA- -5'
29561 5' -62.1 NC_006151.1 + 37719 0.69 0.433348
Target:  5'- cGGGGACGCcaugGCCGCccaGGaCcCGCUCuGGg -3'
miRNA:   3'- -CCCCUGCG----CGGCG---UC-GuGCGAGuCCa -5'
29561 5' -62.1 NC_006151.1 + 66546 0.69 0.433348
Target:  5'- cGGGGGCGCG-CGCGGCcGCGCcgCcguGGa -3'
miRNA:   3'- -CCCCUGCGCgGCGUCG-UGCGa-Gu--CCa -5'
29561 5' -62.1 NC_006151.1 + 84681 0.69 0.44116
Target:  5'- aGGuGGACGagcaGCUGCGGC-CGCUggagcggCAGGUg -3'
miRNA:   3'- -CC-CCUGCg---CGGCGUCGuGCGA-------GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 3695 0.69 0.442033
Target:  5'- -cGGGCGCGCgGCGcuucuucuuGCGcCGCUCGGGc -3'
miRNA:   3'- ccCCUGCGCGgCGU---------CGU-GCGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 105502 0.69 0.445535
Target:  5'- aGGaGGACGUGCgCgagcucgaccgcaugGCGGCGCGCaUCGGGc -3'
miRNA:   3'- -CC-CCUGCGCG-G---------------CGUCGUGCG-AGUCCa -5'
29561 5' -62.1 NC_006151.1 + 81370 0.69 0.449934
Target:  5'- cGGcGGGCgccagcgcgagccGCGCCGCGGCGC-C-CAGGUu -3'
miRNA:   3'- -CC-CCUG-------------CGCGGCGUCGUGcGaGUCCA- -5'
29561 5' -62.1 NC_006151.1 + 19443 0.69 0.450817
Target:  5'- uGGGcggcucGCGCuggaGCCGCGGCAC-CUCGGGc -3'
miRNA:   3'- cCCC------UGCG----CGGCGUCGUGcGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 111755 0.69 0.454357
Target:  5'- aGGGGACGUggGCCcagcugcgaugaggcGCAGCACGUacuccagCGGGa -3'
miRNA:   3'- -CCCCUGCG--CGG---------------CGUCGUGCGa------GUCCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.