miRNA display CGI


Results 81 - 100 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29561 5' -62.1 NC_006151.1 + 3432 0.69 0.458803
Target:  5'- cGGGACGCggcggaaGCCGCcgucgGGCGCgggguGCUCGGGc -3'
miRNA:   3'- cCCCUGCG-------CGGCG-----UCGUG-----CGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 37317 0.69 0.459695
Target:  5'- cGGGcccccgccgaccGACGgGCCGCuGCucacccCGCUCGGGg -3'
miRNA:   3'- -CCC------------CUGCgCGGCGuCGu-----GCGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 81283 0.69 0.459695
Target:  5'- cGGGGAUcucggGCGCgGC-GCGCGCgaCGGGg -3'
miRNA:   3'- -CCCCUG-----CGCGgCGuCGUGCGa-GUCCa -5'
29561 5' -62.1 NC_006151.1 + 25411 0.69 0.459695
Target:  5'- cGGGGGCGcCGCCGCcccacGCGCGCccgUCAu-- -3'
miRNA:   3'- -CCCCUGC-GCGGCGu----CGUGCG---AGUcca -5'
29561 5' -62.1 NC_006151.1 + 17400 0.69 0.459695
Target:  5'- cGGGGCGCGUgGC-GCGCgGCagCAGGg -3'
miRNA:   3'- cCCCUGCGCGgCGuCGUG-CGa-GUCCa -5'
29561 5' -62.1 NC_006151.1 + 135105 0.69 0.459695
Target:  5'- gGGcGGGCG-GCgGUAGCGCGCggggCGGGc -3'
miRNA:   3'- -CC-CCUGCgCGgCGUCGUGCGa---GUCCa -5'
29561 5' -62.1 NC_006151.1 + 84426 0.69 0.459695
Target:  5'- aGGcGGCGCGCgGCGGCGCGCg----- -3'
miRNA:   3'- cCC-CUGCGCGgCGUCGUGCGagucca -5'
29561 5' -62.1 NC_006151.1 + 83853 0.69 0.468665
Target:  5'- cGGaGGAUGCGCauccCGGCGCGCUucCGGGc -3'
miRNA:   3'- -CC-CCUGCGCGgc--GUCGUGCGA--GUCCa -5'
29561 5' -62.1 NC_006151.1 + 137412 0.69 0.468665
Target:  5'- gGGGGGCGCccucGCCGCcGC-CGCg-GGGUc -3'
miRNA:   3'- -CCCCUGCG----CGGCGuCGuGCGagUCCA- -5'
29561 5' -62.1 NC_006151.1 + 98034 0.68 0.474997
Target:  5'- cGGGGugGCGCagCGCgAGCaccaccagccccggGCGCUCGGc- -3'
miRNA:   3'- -CCCCugCGCG--GCG-UCG--------------UGCGAGUCca -5'
29561 5' -62.1 NC_006151.1 + 5622 0.68 0.476814
Target:  5'- aGGGGGCGcCGCCGCcgccgGGCGCcgagaccggcccgGCggCGGGg -3'
miRNA:   3'- -CCCCUGC-GCGGCG-----UCGUG-------------CGa-GUCCa -5'
29561 5' -62.1 NC_006151.1 + 78730 0.68 0.481372
Target:  5'- uGGGGcGCGCGCUGCGGCccacguccgccgucuGCGCcgAGGc -3'
miRNA:   3'- -CCCC-UGCGCGGCGUCG---------------UGCGagUCCa -5'
29561 5' -62.1 NC_006151.1 + 97354 0.68 0.486869
Target:  5'- cGGGGAaggcCGCgGCgGCGGCGgGCgcggCGGGg -3'
miRNA:   3'- -CCCCU----GCG-CGgCGUCGUgCGa---GUCCa -5'
29561 5' -62.1 NC_006151.1 + 5860 0.68 0.486869
Target:  5'- gGGGGACgaGCGcCCGgGGC-CGC-CGGGg -3'
miRNA:   3'- -CCCCUG--CGC-GGCgUCGuGCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 117662 0.68 0.49055
Target:  5'- cGGGGCGUccaggcaCCGCGGCGCgaugaacuugaacucGCUCAGGc -3'
miRNA:   3'- cCCCUGCGc------GGCGUCGUG---------------CGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 97291 0.68 0.49055
Target:  5'- cGGcGGGCGUGUUgagccggcccgucggGCAGCGCGCgcugcgCGGGUc -3'
miRNA:   3'- -CC-CCUGCGCGG---------------CGUCGUGCGa-----GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 132332 0.68 0.496095
Target:  5'- ---cGCGCGCCGUGGcCACGUaCAGGUg -3'
miRNA:   3'- ccccUGCGCGGCGUC-GUGCGaGUCCA- -5'
29561 5' -62.1 NC_006151.1 + 132041 0.68 0.496095
Target:  5'- cGGcGGCGCGCgGCAGCGCGg-CGGa- -3'
miRNA:   3'- cCC-CUGCGCGgCGUCGUGCgaGUCca -5'
29561 5' -62.1 NC_006151.1 + 104970 0.68 0.496095
Target:  5'- cGGGuGACGcCGCCGcCGGCcuCGCUCAa-- -3'
miRNA:   3'- -CCC-CUGC-GCGGC-GUCGu-GCGAGUcca -5'
29561 5' -62.1 NC_006151.1 + 55446 0.68 0.496095
Target:  5'- cGGGACcgGCGCCGcCGGCccCGC-CGGGg -3'
miRNA:   3'- cCCCUG--CGCGGC-GUCGu-GCGaGUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.