miRNA display CGI


Results 61 - 80 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29561 5' -62.1 NC_006151.1 + 84366 0.67 0.572355
Target:  5'- cGGcGGugauCGCGaUCGCGGCGCGCggggacgggCGGGg -3'
miRNA:   3'- -CC-CCu---GCGC-GGCGUCGUGCGa--------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 133793 0.67 0.57138
Target:  5'- gGGGGAgGCGUgcaGCAuccggguGCACGUcCGGGUg -3'
miRNA:   3'- -CCCCUgCGCGg--CGU-------CGUGCGaGUCCA- -5'
29561 5' -62.1 NC_006151.1 + 102227 0.67 0.57138
Target:  5'- cGGGGAgGCGCCGUGcGCcgucgccGCGCUCu--- -3'
miRNA:   3'- -CCCCUgCGCGGCGU-CG-------UGCGAGucca -5'
29561 5' -62.1 NC_006151.1 + 127384 0.67 0.562629
Target:  5'- gGGGGugGCggggGCCGCGGC-CGagucgaCGGGa -3'
miRNA:   3'- -CCCCugCG----CGGCGUCGuGCga----GUCCa -5'
29561 5' -62.1 NC_006151.1 + 118156 0.67 0.562629
Target:  5'- cGGcGGugGCGCCGCuGGUGCGCggccugaccgUCgAGGc -3'
miRNA:   3'- -CC-CCugCGCGGCG-UCGUGCG----------AG-UCCa -5'
29561 5' -62.1 NC_006151.1 + 111837 0.67 0.562629
Target:  5'- -uGGAagacgcacCGCGUCGgGGgGCGCUCGGGg -3'
miRNA:   3'- ccCCU--------GCGCGGCgUCgUGCGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 92192 0.67 0.562629
Target:  5'- cGGGGccgccgacGCGcCGCCGCGGCcGCGCU--GGa -3'
miRNA:   3'- -CCCC--------UGC-GCGGCGUCG-UGCGAguCCa -5'
29561 5' -62.1 NC_006151.1 + 19389 0.67 0.562629
Target:  5'- uGGGcGugGC-CCGCcGgACGgUCAGGUg -3'
miRNA:   3'- -CCC-CugCGcGGCGuCgUGCgAGUCCA- -5'
29561 5' -62.1 NC_006151.1 + 59516 0.67 0.552948
Target:  5'- --cGACGCGCgCGCAGCGcCGCgUgAGGg -3'
miRNA:   3'- cccCUGCGCG-GCGUCGU-GCG-AgUCCa -5'
29561 5' -62.1 NC_006151.1 + 81779 0.67 0.552948
Target:  5'- cGGGACGCGCU-CGGCGCGCcCGu-- -3'
miRNA:   3'- cCCCUGCGCGGcGUCGUGCGaGUcca -5'
29561 5' -62.1 NC_006151.1 + 98254 0.67 0.552948
Target:  5'- -uGGAgGCGCuCGUGcGCGCGCUCgAGGa -3'
miRNA:   3'- ccCCUgCGCG-GCGU-CGUGCGAG-UCCa -5'
29561 5' -62.1 NC_006151.1 + 100888 0.67 0.552948
Target:  5'- uGGaGGugcUGCGCCGCGGCGCGCgcgCGc-- -3'
miRNA:   3'- -CC-CCu--GCGCGGCGUCGUGCGa--GUcca -5'
29561 5' -62.1 NC_006151.1 + 59137 0.67 0.543317
Target:  5'- uGGGugGCGcCCGCGgGCGgGUcCAGGc -3'
miRNA:   3'- cCCCugCGC-GGCGU-CGUgCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 67895 0.67 0.543317
Target:  5'- cGGGGcACaGCGCCaGCAGC---CUCGGGUc -3'
miRNA:   3'- -CCCC-UG-CGCGG-CGUCGugcGAGUCCA- -5'
29561 5' -62.1 NC_006151.1 + 118468 0.67 0.543317
Target:  5'- -cGGACGCGCaCGCGGCcuAC-CUCGuGGUg -3'
miRNA:   3'- ccCCUGCGCG-GCGUCG--UGcGAGU-CCA- -5'
29561 5' -62.1 NC_006151.1 + 121087 0.67 0.543317
Target:  5'- cGGGcGGCgGCGCCggGCuGCAcgaccacuCGCUCGGGg -3'
miRNA:   3'- -CCC-CUG-CGCGG--CGuCGU--------GCGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 92759 0.67 0.542357
Target:  5'- cGGGcaccugaGCGUGCUGCGGCGCGUccccaucgugCAGGa -3'
miRNA:   3'- cCCC-------UGCGCGGCGUCGUGCGa---------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 1848 0.67 0.542357
Target:  5'- aGGGGAccgaggcCGcCGCCGCGG-ACGCagAGGa -3'
miRNA:   3'- -CCCCU-------GC-GCGGCGUCgUGCGagUCCa -5'
29561 5' -62.1 NC_006151.1 + 61305 0.67 0.533742
Target:  5'- -cGGGCGCGUCGCGcuGCAgGUcCAGGg -3'
miRNA:   3'- ccCCUGCGCGGCGU--CGUgCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 39149 0.67 0.533742
Target:  5'- uGGGAccCGCGCCGCGGCGgccucucggcgcUGCUCGc-- -3'
miRNA:   3'- cCCCU--GCGCGGCGUCGU------------GCGAGUcca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.