Results 81 - 100 of 199 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29561 | 5' | -62.1 | NC_006151.1 | + | 39149 | 0.67 | 0.533742 |
Target: 5'- uGGGAccCGCGCCGCGGCGgccucucggcgcUGCUCGc-- -3' miRNA: 3'- cCCCU--GCGCGGCGUCGU------------GCGAGUcca -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 2580 | 0.67 | 0.533742 |
Target: 5'- uGGGGAgcaCGCGCUGgcgguaGGCGCGCggcggcagCGGGa -3' miRNA: 3'- -CCCCU---GCGCGGCg-----UCGUGCGa-------GUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 38682 | 0.67 | 0.532788 |
Target: 5'- cGGGGGCcccggcgcaaGCGCCGCucccucggacucgGGCcCGCUCcGGa -3' miRNA: 3'- -CCCCUG----------CGCGGCG-------------UCGuGCGAGuCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 122485 | 0.67 | 0.530881 |
Target: 5'- cGGGGacgcgggcgagacgGCGCGCCggcgcGCGGaCGCGCUCcuGGa -3' miRNA: 3'- -CCCC--------------UGCGCGG-----CGUC-GUGCGAGu-CCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 139281 | 0.68 | 0.527075 |
Target: 5'- cGGcGGACGCGCCGCccucggcgucugcGGCGCgugcugcucgaccguGCUCgccGGGa -3' miRNA: 3'- -CC-CCUGCGCGGCG-------------UCGUG---------------CGAG---UCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 20461 | 0.68 | 0.524228 |
Target: 5'- gGGGGugGCGCCGgucccccgggGGgGCGCggGGGUc -3' miRNA: 3'- -CCCCugCGCGGCg---------UCgUGCGagUCCA- -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 58422 | 0.68 | 0.524228 |
Target: 5'- -uGGGCGUGCgGCAGCcACGcCUC-GGUg -3' miRNA: 3'- ccCCUGCGCGgCGUCG-UGC-GAGuCCA- -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 76708 | 0.68 | 0.524228 |
Target: 5'- -cGGGCGCGCCGCGGC-CGCc----- -3' miRNA: 3'- ccCCUGCGCGGCGUCGuGCGagucca -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 63514 | 0.68 | 0.524228 |
Target: 5'- uGGGGGCGCGC---GGgGCGgUCGGGg -3' miRNA: 3'- -CCCCUGCGCGgcgUCgUGCgAGUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 99680 | 0.68 | 0.524228 |
Target: 5'- uGGGGccuGCGCGCCGaCGGCGC---CGGGg -3' miRNA: 3'- -CCCC---UGCGCGGC-GUCGUGcgaGUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 133312 | 0.68 | 0.524228 |
Target: 5'- cGGGGGCgGC-CCGUgucgaGGCGCGC-CGGGc -3' miRNA: 3'- -CCCCUG-CGcGGCG-----UCGUGCGaGUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 90703 | 0.68 | 0.522333 |
Target: 5'- cGGcGGACGCGCCcgccccgcaggcgGCGGCgacgguggcggcgGCGCccUCGGGg -3' miRNA: 3'- -CC-CCUGCGCGG-------------CGUCG-------------UGCG--AGUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 4258 | 0.68 | 0.514779 |
Target: 5'- aGGGcagcaGGCGCucgaggacGCCGCGGCAgGC-CAGGa -3' miRNA: 3'- -CCC-----CUGCG--------CGGCGUCGUgCGaGUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 15894 | 0.68 | 0.514779 |
Target: 5'- gGGGGACGCGCgccccgaCGCGGCcCGCcgccgccccgugaggCGGGc -3' miRNA: 3'- -CCCCUGCGCG-------GCGUCGuGCGa--------------GUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 82180 | 0.68 | 0.514779 |
Target: 5'- cGGGGGCGCGaucaUGC-GCAucCGCUCGGcGg -3' miRNA: 3'- -CCCCUGCGCg---GCGuCGU--GCGAGUC-Ca -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 141791 | 0.68 | 0.5054 |
Target: 5'- cGGGGACGCGggucggucCCGCcccgagGGCACgggccgGUUCGGGg -3' miRNA: 3'- -CCCCUGCGC--------GGCG------UCGUG------CGAGUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 103758 | 0.68 | 0.5054 |
Target: 5'- aGGaGCGCGCCGCGGCGCuGCgcgagUCGGa- -3' miRNA: 3'- cCCcUGCGCGGCGUCGUG-CG-----AGUCca -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 3869 | 0.68 | 0.5054 |
Target: 5'- aGGGGGCGCccGCCGCcgccGGCgccgGCGCU-GGGa -3' miRNA: 3'- -CCCCUGCG--CGGCG----UCG----UGCGAgUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 68767 | 0.68 | 0.5026 |
Target: 5'- cGGcGGugGCGCgCGCGGCgagguGCGCcgccgcggccgucaUCAGGc -3' miRNA: 3'- -CC-CCugCGCG-GCGUCG-----UGCG--------------AGUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 55446 | 0.68 | 0.496095 |
Target: 5'- cGGGACcgGCGCCGcCGGCccCGC-CGGGg -3' miRNA: 3'- cCCCUG--CGCGGC-GUCGu-GCGaGUCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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