miRNA display CGI


Results 41 - 60 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29561 5' -62.1 NC_006151.1 + 31622 0.71 0.330182
Target:  5'- cGGGGAugcCGCGCCgGCAcgagcGCACGCgggcgcgCGGGg -3'
miRNA:   3'- -CCCCU---GCGCGG-CGU-----CGUGCGa------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 31752 0.79 0.107344
Target:  5'- cGGGGACGCGCCuGCGGCggcgggcgcGCGC-CGGGc -3'
miRNA:   3'- -CCCCUGCGCGG-CGUCG---------UGCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 33051 0.66 0.611593
Target:  5'- gGGGGAUGCuGCCGCggguGGCAUGagacggaGGGg -3'
miRNA:   3'- -CCCCUGCG-CGGCG----UCGUGCgag----UCCa -5'
29561 5' -62.1 NC_006151.1 + 33960 0.67 0.582121
Target:  5'- cGGGGCGgGaCGCGGCGCccGCgCGGGg -3'
miRNA:   3'- cCCCUGCgCgGCGUCGUG--CGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 34594 0.7 0.391464
Target:  5'- uGGGGcgcccucggagcGCGCGCCG-AGCGCGaggcgCGGGUg -3'
miRNA:   3'- -CCCC------------UGCGCGGCgUCGUGCga---GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 37317 0.69 0.459695
Target:  5'- cGGGcccccgccgaccGACGgGCCGCuGCucacccCGCUCGGGg -3'
miRNA:   3'- -CCC------------CUGCgCGGCGuCGu-----GCGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 37719 0.69 0.433348
Target:  5'- cGGGGACGCcaugGCCGCccaGGaCcCGCUCuGGg -3'
miRNA:   3'- -CCCCUGCG----CGGCG---UC-GuGCGAGuCCa -5'
29561 5' -62.1 NC_006151.1 + 37862 0.73 0.257942
Target:  5'- cGGGcCGCGCCGCGGaccccCGCGC-CGGGg -3'
miRNA:   3'- cCCCuGCGCGGCGUC-----GUGCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 38186 0.67 0.572355
Target:  5'- --cGugGCGCCGCuGGUGCGCUaCAGcGUg -3'
miRNA:   3'- cccCugCGCGGCG-UCGUGCGA-GUC-CA- -5'
29561 5' -62.1 NC_006151.1 + 38682 0.67 0.532788
Target:  5'- cGGGGGCcccggcgcaaGCGCCGCucccucggacucgGGCcCGCUCcGGa -3'
miRNA:   3'- -CCCCUG----------CGCGGCG-------------UCGuGCGAGuCCa -5'
29561 5' -62.1 NC_006151.1 + 39149 0.67 0.533742
Target:  5'- uGGGAccCGCGCCGCGGCGgccucucggcgcUGCUCGc-- -3'
miRNA:   3'- cCCCU--GCGCGGCGUCGU------------GCGAGUcca -5'
29561 5' -62.1 NC_006151.1 + 40143 0.66 0.620468
Target:  5'- cGGcGGCGaCGgccggccCCGCGGCcCGCUCGGGc -3'
miRNA:   3'- cCC-CUGC-GC-------GGCGUCGuGCGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 51399 0.73 0.270047
Target:  5'- cGGGGcgaGCGCGUCGCAGCGCGUgCAc-- -3'
miRNA:   3'- -CCCC---UGCGCGGCGUCGUGCGaGUcca -5'
29561 5' -62.1 NC_006151.1 + 53483 0.66 0.631324
Target:  5'- cGGcaGCGaGCCGUGGCACGCgaaggcCAGGUg -3'
miRNA:   3'- -CCccUGCgCGGCGUCGUGCGa-----GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 54850 0.66 0.611593
Target:  5'- cGGGGA-GUGCCuggugcucugGCAGC-CGCUguGGc -3'
miRNA:   3'- -CCCCUgCGCGG----------CGUCGuGCGAguCCa -5'
29561 5' -62.1 NC_006151.1 + 55446 0.68 0.496095
Target:  5'- cGGGACcgGCGCCGcCGGCccCGC-CGGGg -3'
miRNA:   3'- cCCCUG--CGCGGC-GUCGu-GCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 55472 0.66 0.635272
Target:  5'- nGGGGcGCGCGCC-CGGCGCcgcggacggccagccGCcgCGGGa -3'
miRNA:   3'- -CCCC-UGCGCGGcGUCGUG---------------CGa-GUCCa -5'
29561 5' -62.1 NC_006151.1 + 56567 0.69 0.424762
Target:  5'- cGGGcGACGCGCCGCcGCccgACGggCuGGUg -3'
miRNA:   3'- -CCC-CUGCGCGGCGuCG---UGCgaGuCCA- -5'
29561 5' -62.1 NC_006151.1 + 56599 0.77 0.152382
Target:  5'- -cGGACGCGCCccgGCGGCGCGCUCAc-- -3'
miRNA:   3'- ccCCUGCGCGG---CGUCGUGCGAGUcca -5'
29561 5' -62.1 NC_006151.1 + 56668 0.71 0.352308
Target:  5'- uGGuGGACgacgGCGCCGC-GCGCGCUCAc-- -3'
miRNA:   3'- -CC-CCUG----CGCGGCGuCGUGCGAGUcca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.