miRNA display CGI


Results 61 - 80 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29561 5' -62.1 NC_006151.1 + 57049 0.66 0.630337
Target:  5'- gGGGGGCGCaGCUGCucguagggcaccgGGCcgGCGCcgcgCAGGc -3'
miRNA:   3'- -CCCCUGCG-CGGCG-------------UCG--UGCGa---GUCCa -5'
29561 5' -62.1 NC_006151.1 + 57356 0.71 0.367633
Target:  5'- cGGGGcccucGCGcCGCCGCAGCcaguagGCGUggCAGGa -3'
miRNA:   3'- -CCCC-----UGC-GCGGCGUCG------UGCGa-GUCCa -5'
29561 5' -62.1 NC_006151.1 + 57469 0.66 0.621455
Target:  5'- aGGuGcCGCGCCGCGGCG-GCcucgCAGGc -3'
miRNA:   3'- cCC-CuGCGCGGCGUCGUgCGa---GUCCa -5'
29561 5' -62.1 NC_006151.1 + 57746 0.75 0.185278
Target:  5'- --cGGCGCGCCGCAGC-CGCUCGuGGc -3'
miRNA:   3'- cccCUGCGCGGCGUCGuGCGAGU-CCa -5'
29561 5' -62.1 NC_006151.1 + 58422 0.68 0.524228
Target:  5'- -uGGGCGUGCgGCAGCcACGcCUC-GGUg -3'
miRNA:   3'- ccCCUGCGCGgCGUCG-UGC-GAGuCCA- -5'
29561 5' -62.1 NC_006151.1 + 59137 0.67 0.543317
Target:  5'- uGGGugGCGcCCGCGgGCGgGUcCAGGc -3'
miRNA:   3'- cCCCugCGC-GGCGU-CGUgCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 59319 0.73 0.256757
Target:  5'- cGGGccCGCGCCcccgcccgccccCAGCGCGCUCAGGg -3'
miRNA:   3'- -CCCcuGCGCGGc-----------GUCGUGCGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 59516 0.67 0.552948
Target:  5'- --cGACGCGCgCGCAGCGcCGCgUgAGGg -3'
miRNA:   3'- cccCUGCGCG-GCGUCGU-GCG-AgUCCa -5'
29561 5' -62.1 NC_006151.1 + 59675 0.75 0.203974
Target:  5'- cGGGGACGCGCgCGCacgcgccgAGCACgGC-CAGGc -3'
miRNA:   3'- -CCCCUGCGCG-GCG--------UCGUG-CGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 59857 0.74 0.21905
Target:  5'- gGGGGGCGCagcuGCCGCAGCAcCGCUgGcuGGc -3'
miRNA:   3'- -CCCCUGCG----CGGCGUCGU-GCGAgU--CCa -5'
29561 5' -62.1 NC_006151.1 + 61305 0.67 0.533742
Target:  5'- -cGGGCGCGUCGCGcuGCAgGUcCAGGg -3'
miRNA:   3'- ccCCUGCGCGGCGU--CGUgCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 61767 0.67 0.572355
Target:  5'- cGGGGGCcgugGUGCUGCGGCGCGaggCcGGc -3'
miRNA:   3'- -CCCCUG----CGCGGCGUCGUGCga-GuCCa -5'
29561 5' -62.1 NC_006151.1 + 63514 0.68 0.524228
Target:  5'- uGGGGGCGCGC---GGgGCGgUCGGGg -3'
miRNA:   3'- -CCCCUGCGCGgcgUCgUGCgAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 64303 0.76 0.172264
Target:  5'- -cGGGCGUGCCGCAGCGCGCcgugCuGGc -3'
miRNA:   3'- ccCCUGCGCGGCGUCGUGCGa---GuCCa -5'
29561 5' -62.1 NC_006151.1 + 64486 0.72 0.309097
Target:  5'- cGGGGACGC-CCGCGG-GCGCgggcggCGGGc -3'
miRNA:   3'- -CCCCUGCGcGGCGUCgUGCGa-----GUCCa -5'
29561 5' -62.1 NC_006151.1 + 64546 0.72 0.300955
Target:  5'- cGGGGGCGgcgagGCCGUGGCGCGCcagcucgacgagCAGGUc -3'
miRNA:   3'- -CCCCUGCg----CGGCGUCGUGCGa-----------GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 64636 0.66 0.621455
Target:  5'- cGGGGCGCGgCGCccCGCGCaggaaccgCAGGa -3'
miRNA:   3'- cCCCUGCGCgGCGucGUGCGa-------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 65716 0.74 0.235069
Target:  5'- aGGGGGCcucGCGCgGCuGCGCGCggccCAGGa -3'
miRNA:   3'- -CCCCUG---CGCGgCGuCGUGCGa---GUCCa -5'
29561 5' -62.1 NC_006151.1 + 65809 0.66 0.611593
Target:  5'- -cGGACGUGCCGCGGUggaugggcggccGCGC-CAGc- -3'
miRNA:   3'- ccCCUGCGCGGCGUCG------------UGCGaGUCca -5'
29561 5' -62.1 NC_006151.1 + 66546 0.69 0.433348
Target:  5'- cGGGGGCGCG-CGCGGCcGCGCcgCcguGGa -3'
miRNA:   3'- -CCCCUGCGCgGCGUCG-UGCGa-Gu--CCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.