miRNA display CGI


Results 81 - 100 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29561 5' -62.1 NC_006151.1 + 67895 0.67 0.543317
Target:  5'- cGGGGcACaGCGCCaGCAGC---CUCGGGUc -3'
miRNA:   3'- -CCCC-UG-CGCGG-CGUCGugcGAGUCCA- -5'
29561 5' -62.1 NC_006151.1 + 68767 0.68 0.5026
Target:  5'- cGGcGGugGCGCgCGCGGCgagguGCGCcgccgcggccgucaUCAGGc -3'
miRNA:   3'- -CC-CCugCGCG-GCGUCG-----UGCG--------------AGUCCa -5'
29561 5' -62.1 NC_006151.1 + 68878 0.69 0.424762
Target:  5'- cGGGGCGCGCC-CGGCcACGUcgAGGa -3'
miRNA:   3'- cCCCUGCGCGGcGUCG-UGCGagUCCa -5'
29561 5' -62.1 NC_006151.1 + 68978 0.73 0.276268
Target:  5'- -cGGACGCcgGCCaGCAGCGCGCgcacgCAGGc -3'
miRNA:   3'- ccCCUGCG--CGG-CGUCGUGCGa----GUCCa -5'
29561 5' -62.1 NC_006151.1 + 69763 0.74 0.240622
Target:  5'- cGGGGccACGCGCCGCGcGCGCGCgUAGu- -3'
miRNA:   3'- -CCCC--UGCGCGGCGU-CGUGCGaGUCca -5'
29561 5' -62.1 NC_006151.1 + 73384 0.7 0.399628
Target:  5'- cGGGGGCGCGCagCGCGGC-CGC-CGcGUa -3'
miRNA:   3'- -CCCCUGCGCG--GCGUCGuGCGaGUcCA- -5'
29561 5' -62.1 NC_006151.1 + 73600 0.72 0.309097
Target:  5'- cGGGGugcagcugGCGCCGCAGCugGU--GGGUg -3'
miRNA:   3'- -CCCCug------CGCGGCGUCGugCGagUCCA- -5'
29561 5' -62.1 NC_006151.1 + 76708 0.68 0.524228
Target:  5'- -cGGGCGCGCCGCGGC-CGCc----- -3'
miRNA:   3'- ccCCUGCGCGGCGUCGuGCGagucca -5'
29561 5' -62.1 NC_006151.1 + 77939 0.67 0.572355
Target:  5'- gGGcGGGCGCGCgGCcccCACGCUgAGcGUg -3'
miRNA:   3'- -CC-CCUGCGCGgCGuc-GUGCGAgUC-CA- -5'
29561 5' -62.1 NC_006151.1 + 78392 0.66 0.641193
Target:  5'- aGGGGGCG-GCCaCGGCgGCuCUCGGGc -3'
miRNA:   3'- -CCCCUGCgCGGcGUCG-UGcGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 78538 0.74 0.240622
Target:  5'- cGGGGGCcuCGCCGCcgacgacgaAGCACGCcCGGGa -3'
miRNA:   3'- -CCCCUGc-GCGGCG---------UCGUGCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 78730 0.68 0.481372
Target:  5'- uGGGGcGCGCGCUGCGGCccacguccgccgucuGCGCcgAGGc -3'
miRNA:   3'- -CCCC-UGCGCGGCGUCG---------------UGCGagUCCa -5'
29561 5' -62.1 NC_006151.1 + 81283 0.69 0.459695
Target:  5'- cGGGGAUcucggGCGCgGC-GCGCGCgaCGGGg -3'
miRNA:   3'- -CCCCUG-----CGCGgCGuCGUGCGa-GUCCa -5'
29561 5' -62.1 NC_006151.1 + 81370 0.69 0.449934
Target:  5'- cGGcGGGCgccagcgcgagccGCGCCGCGGCGC-C-CAGGUu -3'
miRNA:   3'- -CC-CCUG-------------CGCGGCGUCGUGcGaGUCCA- -5'
29561 5' -62.1 NC_006151.1 + 81532 0.69 0.433348
Target:  5'- cGGcGGC-CGCgGCGGCGCGCUCcgcGGUg -3'
miRNA:   3'- cCC-CUGcGCGgCGUCGUGCGAGu--CCA- -5'
29561 5' -62.1 NC_006151.1 + 81582 0.66 0.631324
Target:  5'- aGGGucucgcGCGCGUCGCcggggccgccGGCGCGCagcagCAGGg -3'
miRNA:   3'- cCCC------UGCGCGGCG----------UCGUGCGa----GUCCa -5'
29561 5' -62.1 NC_006151.1 + 81779 0.67 0.552948
Target:  5'- cGGGACGCGCU-CGGCGCGCcCGu-- -3'
miRNA:   3'- cCCCUGCGCGGcGUCGUGCGaGUcca -5'
29561 5' -62.1 NC_006151.1 + 82180 0.68 0.514779
Target:  5'- cGGGGGCGCGaucaUGC-GCAucCGCUCGGcGg -3'
miRNA:   3'- -CCCCUGCGCg---GCGuCGU--GCGAGUC-Ca -5'
29561 5' -62.1 NC_006151.1 + 82608 0.66 0.59192
Target:  5'- gGGuGGGCccgcgcgcggGCGCCGCGGUggGCgCGGGa -3'
miRNA:   3'- -CC-CCUG----------CGCGGCGUCGugCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 83258 0.69 0.424762
Target:  5'- --cGuCGCGCCaGCGGCGCcccgaGCUCAGGUa -3'
miRNA:   3'- cccCuGCGCGG-CGUCGUG-----CGAGUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.