Results 101 - 120 of 199 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29561 | 5' | -62.1 | NC_006151.1 | + | 83360 | 0.67 | 0.572355 |
Target: 5'- --cGGCGCGCgCGCgGGCGCGCaggcgccgCAGGUg -3' miRNA: 3'- cccCUGCGCG-GCG-UCGUGCGa-------GUCCA- -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 83853 | 0.69 | 0.468665 |
Target: 5'- cGGaGGAUGCGCauccCGGCGCGCUucCGGGc -3' miRNA: 3'- -CC-CCUGCGCGgc--GUCGUGCGA--GUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 84151 | 0.66 | 0.621455 |
Target: 5'- aGGGGcUGUGCCaGCuGCGCGaCUCGGc- -3' miRNA: 3'- -CCCCuGCGCGG-CGuCGUGC-GAGUCca -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 84366 | 0.67 | 0.572355 |
Target: 5'- cGGcGGugauCGCGaUCGCGGCGCGCggggacgggCGGGg -3' miRNA: 3'- -CC-CCu---GCGC-GGCGUCGUGCGa--------GUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 84426 | 0.69 | 0.459695 |
Target: 5'- aGGcGGCGCGCgGCGGCGCGCg----- -3' miRNA: 3'- cCC-CUGCGCGgCGUCGUGCGagucca -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 84681 | 0.69 | 0.44116 |
Target: 5'- aGGuGGACGagcaGCUGCGGC-CGCUggagcggCAGGUg -3' miRNA: 3'- -CC-CCUGCg---CGGCGUCGuGCGA-------GUCCA- -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 85163 | 0.66 | 0.651056 |
Target: 5'- aGGGGGCcgGCGCCGCgGGCGcCGCcgccccgCuGGg -3' miRNA: 3'- -CCCCUG--CGCGGCG-UCGU-GCGa------GuCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 85490 | 0.76 | 0.16811 |
Target: 5'- -aGGACGCGCCGCugcuGCGCGC-CAcGGUg -3' miRNA: 3'- ccCCUGCGCGGCGu---CGUGCGaGU-CCA- -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 85647 | 0.71 | 0.344818 |
Target: 5'- cGGGGACGCGcCCGCcuCGCGCagCGGcGa -3' miRNA: 3'- -CCCCUGCGC-GGCGucGUGCGa-GUC-Ca -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 88026 | 0.69 | 0.429902 |
Target: 5'- gGGGGAgGCGUCGUAGCGCuGCguguccucgaagaCGGGc -3' miRNA: 3'- -CCCCUgCGCGGCGUCGUG-CGa------------GUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 88448 | 0.66 | 0.631324 |
Target: 5'- cGGaGACGCGCgUGCGGCGCccgaGCUCGucggccacGGUg -3' miRNA: 3'- cCC-CUGCGCG-GCGUCGUG----CGAGU--------CCA- -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 88606 | 0.67 | 0.582121 |
Target: 5'- -aGGACGgGC---GGCGCGCUCAGGc -3' miRNA: 3'- ccCCUGCgCGgcgUCGUGCGAGUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 89718 | 0.66 | 0.59192 |
Target: 5'- cGGcGGCGCcgGCCGCGGC-CGCgguGGUg -3' miRNA: 3'- cCC-CUGCG--CGGCGUCGuGCGaguCCA- -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 90703 | 0.68 | 0.522333 |
Target: 5'- cGGcGGACGCGCCcgccccgcaggcgGCGGCgacgguggcggcgGCGCccUCGGGg -3' miRNA: 3'- -CC-CCUGCGCGG-------------CGUCG-------------UGCG--AGUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 91564 | 0.66 | 0.611593 |
Target: 5'- cGGGGCGaugGCgGCGcGCGCGUgcucCAGGUg -3' miRNA: 3'- cCCCUGCg--CGgCGU-CGUGCGa---GUCCA- -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 92192 | 0.67 | 0.562629 |
Target: 5'- cGGGGccgccgacGCGcCGCCGCGGCcGCGCU--GGa -3' miRNA: 3'- -CCCC--------UGC-GCGGCGUCG-UGCGAguCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 92684 | 0.69 | 0.424762 |
Target: 5'- cGGGGACGCGCgcuCGCcGCGCGC-CGa-- -3' miRNA: 3'- -CCCCUGCGCG---GCGuCGUGCGaGUcca -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 92759 | 0.67 | 0.542357 |
Target: 5'- cGGGcaccugaGCGUGCUGCGGCGCGUccccaucgugCAGGa -3' miRNA: 3'- cCCC-------UGCGCGGCGUCGUGCGa---------GUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 93449 | 0.81 | 0.076991 |
Target: 5'- cGGGGGuCGcCGCCGCGGgGCGCUaCAGGUc -3' miRNA: 3'- -CCCCU-GC-GCGGCGUCgUGCGA-GUCCA- -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 93572 | 0.66 | 0.631324 |
Target: 5'- cGGGGGCGgGCgCGCcaaagAGCGgGCUCGc-- -3' miRNA: 3'- -CCCCUGCgCG-GCG-----UCGUgCGAGUcca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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