miRNA display CGI


Results 141 - 160 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29561 5' -62.1 NC_006151.1 + 103758 0.68 0.5054
Target:  5'- aGGaGCGCGCCGCGGCGCuGCgcgagUCGGa- -3'
miRNA:   3'- cCCcUGCGCGGCGUCGUG-CG-----AGUCca -5'
29561 5' -62.1 NC_006151.1 + 103907 0.67 0.572355
Target:  5'- uGGaGGugGCGCgCGCGGC-CGC-CGuGGa -3'
miRNA:   3'- -CC-CCugCGCG-GCGUCGuGCGaGU-CCa -5'
29561 5' -62.1 NC_006151.1 + 104030 0.7 0.416279
Target:  5'- aGGuGGA-GCGCgCGCAGCGCcaGCUCuGGg -3'
miRNA:   3'- -CC-CCUgCGCG-GCGUCGUG--CGAGuCCa -5'
29561 5' -62.1 NC_006151.1 + 104664 0.66 0.620468
Target:  5'- --cGACGCGgCGC-GCGCGCUCgacgaggGGGUg -3'
miRNA:   3'- cccCUGCGCgGCGuCGUGCGAG-------UCCA- -5'
29561 5' -62.1 NC_006151.1 + 104902 0.73 0.276268
Target:  5'- uGGuGGACGCgGCgGCGGCGCGCgaccgcgaCGGGg -3'
miRNA:   3'- -CC-CCUGCG-CGgCGUCGUGCGa-------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 104970 0.68 0.496095
Target:  5'- cGGGuGACGcCGCCGcCGGCcuCGCUCAa-- -3'
miRNA:   3'- -CCC-CUGC-GCGGC-GUCGu-GCGAGUcca -5'
29561 5' -62.1 NC_006151.1 + 105284 0.66 0.601746
Target:  5'- -uGGGCGCGCgCGCGGCcGCGC-CGGc- -3'
miRNA:   3'- ccCCUGCGCG-GCGUCG-UGCGaGUCca -5'
29561 5' -62.1 NC_006151.1 + 105502 0.69 0.445535
Target:  5'- aGGaGGACGUGCgCgagcucgaccgcaugGCGGCGCGCaUCGGGc -3'
miRNA:   3'- -CC-CCUGCGCG-G---------------CGUCGUGCG-AGUCCa -5'
29561 5' -62.1 NC_006151.1 + 111413 0.66 0.641193
Target:  5'- cGGGGcgggagaccgaGCGCuGCCGCaucucGGCGCGgUcCAGGa -3'
miRNA:   3'- -CCCC-----------UGCG-CGGCG-----UCGUGCgA-GUCCa -5'
29561 5' -62.1 NC_006151.1 + 111755 0.69 0.454357
Target:  5'- aGGGGACGUggGCCcagcugcgaugaggcGCAGCACGUacuccagCGGGa -3'
miRNA:   3'- -CCCCUGCG--CGG---------------CGUCGUGCGa------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 111837 0.67 0.562629
Target:  5'- -uGGAagacgcacCGCGUCGgGGgGCGCUCGGGg -3'
miRNA:   3'- ccCCU--------GCGCGGCgUCgUGCGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 113106 0.66 0.611593
Target:  5'- cGGGGGCgGgGCCGCGG-ACGCggacgccgcCGGGc -3'
miRNA:   3'- -CCCCUG-CgCGGCGUCgUGCGa--------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 113522 0.67 0.533742
Target:  5'- uGGcGGACGCGCgcuuccuggCGCugauGCGCGCcgCGGGc -3'
miRNA:   3'- -CC-CCUGCGCG---------GCGu---CGUGCGa-GUCCa -5'
29561 5' -62.1 NC_006151.1 + 115184 0.73 0.276268
Target:  5'- aGGGGGCGCuCCaGcCAGCGCGCcgCGGGc -3'
miRNA:   3'- -CCCCUGCGcGG-C-GUCGUGCGa-GUCCa -5'
29561 5' -62.1 NC_006151.1 + 117550 0.69 0.423909
Target:  5'- cGGcGACGCGCCGCGGCcagaaGgGCUCcccgcggAGGa -3'
miRNA:   3'- cCC-CUGCGCGGCGUCG-----UgCGAG-------UCCa -5'
29561 5' -62.1 NC_006151.1 + 117662 0.68 0.49055
Target:  5'- cGGGGCGUccaggcaCCGCGGCGCgaugaacuugaacucGCUCAGGc -3'
miRNA:   3'- cCCCUGCGc------GGCGUCGUG---------------CGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 118156 0.67 0.562629
Target:  5'- cGGcGGugGCGCCGCuGGUGCGCggccugaccgUCgAGGc -3'
miRNA:   3'- -CC-CCugCGCGGCG-UCGUGCG----------AG-UCCa -5'
29561 5' -62.1 NC_006151.1 + 118468 0.67 0.543317
Target:  5'- -cGGACGCGCaCGCGGCcuAC-CUCGuGGUg -3'
miRNA:   3'- ccCCUGCGCG-GCGUCG--UGcGAGU-CCA- -5'
29561 5' -62.1 NC_006151.1 + 119046 0.66 0.611593
Target:  5'- -aGGACggcgGCGCCGCGGC-CGCcuccgCGGGc -3'
miRNA:   3'- ccCCUG----CGCGGCGUCGuGCGa----GUCCa -5'
29561 5' -62.1 NC_006151.1 + 120826 0.66 0.601746
Target:  5'- -uGGACGCGCCGCGcgacGaCACGU--GGGUg -3'
miRNA:   3'- ccCCUGCGCGGCGU----C-GUGCGagUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.