miRNA display CGI


Results 21 - 40 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29561 5' -62.1 NC_006151.1 + 132041 0.68 0.496095
Target:  5'- cGGcGGCGCGCgGCAGCGCGg-CGGa- -3'
miRNA:   3'- cCC-CUGCGCGgCGUCGUGCgaGUCca -5'
29561 5' -62.1 NC_006151.1 + 131850 0.66 0.611593
Target:  5'- cGGGGcggccgagacGCGCGCCgGCGGCGuCGggucgCAGGg -3'
miRNA:   3'- -CCCC----------UGCGCGG-CGUCGU-GCga---GUCCa -5'
29561 5' -62.1 NC_006151.1 + 131519 0.66 0.640206
Target:  5'- gGGGGAacggcuggaaGCGCUGCucuugcgAGCGC-CUCGGGc -3'
miRNA:   3'- -CCCCUg---------CGCGGCG-------UCGUGcGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 131448 0.66 0.601746
Target:  5'- cGGcGGGCggaaguccggGCGCCGCaccucgcccacgAGCACGUccugCAGGUg -3'
miRNA:   3'- -CC-CCUG----------CGCGGCG------------UCGUGCGa---GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 131109 0.66 0.621455
Target:  5'- gGGGGGCcCgGCCGCGGCGCGgg-AGGc -3'
miRNA:   3'- -CCCCUGcG-CGGCGUCGUGCgagUCCa -5'
29561 5' -62.1 NC_006151.1 + 131051 0.67 0.581143
Target:  5'- cGGGGcCGgaggccgucuccaUGCCGCggagGGCGCGCgaCAGGUa -3'
miRNA:   3'- -CCCCuGC-------------GCGGCG----UCGUGCGa-GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 130681 0.73 0.276268
Target:  5'- cGGGGCGCGgCGCAGgAUGUcCGGGg -3'
miRNA:   3'- cCCCUGCGCgGCGUCgUGCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 130475 0.66 0.611593
Target:  5'- aGGGcGAUGgccUGCCGCAGCGCGCg----- -3'
miRNA:   3'- -CCC-CUGC---GCGGCGUCGUGCGagucca -5'
29561 5' -62.1 NC_006151.1 + 130313 0.77 0.134605
Target:  5'- cGGaGCGCGCgCGCcGCGCGCUCGGGg -3'
miRNA:   3'- cCCcUGCGCG-GCGuCGUGCGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 129345 0.71 0.352308
Target:  5'- cGGGGcggccgGCGCGCCGauaaauGCGCUCGGGg -3'
miRNA:   3'- -CCCC------UGCGCGGCgucg--UGCGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 129214 0.75 0.194429
Target:  5'- cGGGGGC-CGCCagcagGCAGCugGCgCGGGUg -3'
miRNA:   3'- -CCCCUGcGCGG-----CGUCGugCGaGUCCA- -5'
29561 5' -62.1 NC_006151.1 + 129091 0.67 0.572355
Target:  5'- cGGGGGCGUaguuGCUGC-GCACGagcgcCAGGg -3'
miRNA:   3'- -CCCCUGCG----CGGCGuCGUGCga---GUCCa -5'
29561 5' -62.1 NC_006151.1 + 128260 0.7 0.416279
Target:  5'- uGGuGGAagcggcacUGCGCgCGCAGCGcCGCgcgCAGGUa -3'
miRNA:   3'- -CC-CCU--------GCGCG-GCGUCGU-GCGa--GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 127864 0.67 0.580165
Target:  5'- aGGGGGCGCcgcccGCCGCcguccaccuccAGCucgucguccgaGCUCGGGg -3'
miRNA:   3'- -CCCCUGCG-----CGGCG-----------UCGug---------CGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 127384 0.67 0.562629
Target:  5'- gGGGGugGCggggGCCGCGGC-CGagucgaCGGGa -3'
miRNA:   3'- -CCCCugCG----CGGCGUCGuGCga----GUCCa -5'
29561 5' -62.1 NC_006151.1 + 122485 0.67 0.530881
Target:  5'- cGGGGacgcgggcgagacgGCGCGCCggcgcGCGGaCGCGCUCcuGGa -3'
miRNA:   3'- -CCCC--------------UGCGCGG-----CGUC-GUGCGAGu-CCa -5'
29561 5' -62.1 NC_006151.1 + 122374 0.7 0.391464
Target:  5'- cGGGcucgacgaGGCGCGCCGCgGGCGCGCgCuGGc -3'
miRNA:   3'- -CCC--------CUGCGCGGCG-UCGUGCGaGuCCa -5'
29561 5' -62.1 NC_006151.1 + 121183 0.71 0.352308
Target:  5'- -cGGcCGUGCUGCA-CGCGCUCGGGg -3'
miRNA:   3'- ccCCuGCGCGGCGUcGUGCGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 121087 0.67 0.543317
Target:  5'- cGGGcGGCgGCGCCggGCuGCAcgaccacuCGCUCGGGg -3'
miRNA:   3'- -CCC-CUG-CGCGG--CGuCGU--------GCGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 120826 0.66 0.601746
Target:  5'- -uGGACGCGCCGCGcgacGaCACGU--GGGUg -3'
miRNA:   3'- ccCCUGCGCGGCGU----C-GUGCGagUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.