miRNA display CGI


Results 61 - 80 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29561 5' -62.1 NC_006151.1 + 103545 0.71 0.352308
Target:  5'- -uGGugGgCGCCggGCAGC-CGCUCGGGg -3'
miRNA:   3'- ccCCugC-GCGG--CGUCGuGCGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 103290 0.66 0.611593
Target:  5'- aGGaGACGCGCgCGCGGCuCGCgCGGc- -3'
miRNA:   3'- cCC-CUGCGCG-GCGUCGuGCGaGUCca -5'
29561 5' -62.1 NC_006151.1 + 102621 0.7 0.407901
Target:  5'- -cGGGCGCGCgaCGUgAGCGCGCUCgAGGc -3'
miRNA:   3'- ccCCUGCGCG--GCG-UCGUGCGAG-UCCa -5'
29561 5' -62.1 NC_006151.1 + 102227 0.67 0.57138
Target:  5'- cGGGGAgGCGCCGUGcGCcgucgccGCGCUCu--- -3'
miRNA:   3'- -CCCCUgCGCGGCGU-CG-------UGCGAGucca -5'
29561 5' -62.1 NC_006151.1 + 100888 0.67 0.552948
Target:  5'- uGGaGGugcUGCGCCGCGGCGCGCgcgCGc-- -3'
miRNA:   3'- -CC-CCu--GCGCGGCGUCGUGCGa--GUcca -5'
29561 5' -62.1 NC_006151.1 + 100059 0.7 0.375465
Target:  5'- cGGGGuCGUGCgCGCGGC-CGCcgAGGUg -3'
miRNA:   3'- -CCCCuGCGCG-GCGUCGuGCGagUCCA- -5'
29561 5' -62.1 NC_006151.1 + 99680 0.68 0.524228
Target:  5'- uGGGGccuGCGCGCCGaCGGCGC---CGGGg -3'
miRNA:   3'- -CCCC---UGCGCGGC-GUCGUGcgaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 99466 0.7 0.415437
Target:  5'- cGGGGACGUGaCgGCGGCGCugggGCUCcccgagaAGGg -3'
miRNA:   3'- -CCCCUGCGC-GgCGUCGUG----CGAG-------UCCa -5'
29561 5' -62.1 NC_006151.1 + 99052 0.71 0.352308
Target:  5'- cGGGGACGCGUacgugCGCgAGCuGCGCcCGGGc -3'
miRNA:   3'- -CCCCUGCGCG-----GCG-UCG-UGCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 98254 0.67 0.552948
Target:  5'- -uGGAgGCGCuCGUGcGCGCGCUCgAGGa -3'
miRNA:   3'- ccCCUgCGCG-GCGU-CGUGCGAG-UCCa -5'
29561 5' -62.1 NC_006151.1 + 98034 0.68 0.474997
Target:  5'- cGGGGugGCGCagCGCgAGCaccaccagccccggGCGCUCGGc- -3'
miRNA:   3'- -CCCCugCGCG--GCG-UCG--------------UGCGAGUCca -5'
29561 5' -62.1 NC_006151.1 + 97354 0.68 0.486869
Target:  5'- cGGGGAaggcCGCgGCgGCGGCGgGCgcggCGGGg -3'
miRNA:   3'- -CCCCU----GCG-CGgCGUCGUgCGa---GUCCa -5'
29561 5' -62.1 NC_006151.1 + 97291 0.68 0.49055
Target:  5'- cGGcGGGCGUGUUgagccggcccgucggGCAGCGCGCgcugcgCGGGUc -3'
miRNA:   3'- -CC-CCUGCGCGG---------------CGUCGUGCGa-----GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 97242 0.7 0.407901
Target:  5'- cGGGuGGCGCgGCCGC-GCAUG-UCGGGg -3'
miRNA:   3'- -CCC-CUGCG-CGGCGuCGUGCgAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 96854 0.76 0.156184
Target:  5'- cGGGGAaacCGCGCCcgccgggcGCGGCGCGCgCGGGg -3'
miRNA:   3'- -CCCCU---GCGCGG--------CGUCGUGCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 95969 0.66 0.601746
Target:  5'- --cGACGcCGCCGCGGCGCag-CAGGa -3'
miRNA:   3'- cccCUGC-GCGGCGUCGUGcgaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 95331 0.66 0.641193
Target:  5'- --cGAagGCGCCGCccgccaGGCACGCgggCAGGUu -3'
miRNA:   3'- cccCUg-CGCGGCG------UCGUGCGa--GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 94594 0.66 0.600762
Target:  5'- aGGGGGCGCGguCCGC-GCACaugucgaugagcaGCUCcuGGUc -3'
miRNA:   3'- -CCCCUGCGC--GGCGuCGUG-------------CGAGu-CCA- -5'
29561 5' -62.1 NC_006151.1 + 94359 0.66 0.611593
Target:  5'- uGGGACGUGUaaaaGUAcuccauggcGCGCGCUCacAGGUg -3'
miRNA:   3'- cCCCUGCGCGg---CGU---------CGUGCGAG--UCCA- -5'
29561 5' -62.1 NC_006151.1 + 93572 0.66 0.631324
Target:  5'- cGGGGGCGgGCgCGCcaaagAGCGgGCUCGc-- -3'
miRNA:   3'- -CCCCUGCgCG-GCG-----UCGUgCGAGUcca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.