miRNA display CGI


Results 81 - 100 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29561 5' -62.1 NC_006151.1 + 93449 0.81 0.076991
Target:  5'- cGGGGGuCGcCGCCGCGGgGCGCUaCAGGUc -3'
miRNA:   3'- -CCCCU-GC-GCGGCGUCgUGCGA-GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 92759 0.67 0.542357
Target:  5'- cGGGcaccugaGCGUGCUGCGGCGCGUccccaucgugCAGGa -3'
miRNA:   3'- cCCC-------UGCGCGGCGUCGUGCGa---------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 92684 0.69 0.424762
Target:  5'- cGGGGACGCGCgcuCGCcGCGCGC-CGa-- -3'
miRNA:   3'- -CCCCUGCGCG---GCGuCGUGCGaGUcca -5'
29561 5' -62.1 NC_006151.1 + 92192 0.67 0.562629
Target:  5'- cGGGGccgccgacGCGcCGCCGCGGCcGCGCU--GGa -3'
miRNA:   3'- -CCCC--------UGC-GCGGCGUCG-UGCGAguCCa -5'
29561 5' -62.1 NC_006151.1 + 91564 0.66 0.611593
Target:  5'- cGGGGCGaugGCgGCGcGCGCGUgcucCAGGUg -3'
miRNA:   3'- cCCCUGCg--CGgCGU-CGUGCGa---GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 90703 0.68 0.522333
Target:  5'- cGGcGGACGCGCCcgccccgcaggcgGCGGCgacgguggcggcgGCGCccUCGGGg -3'
miRNA:   3'- -CC-CCUGCGCGG-------------CGUCG-------------UGCG--AGUCCa -5'
29561 5' -62.1 NC_006151.1 + 89718 0.66 0.59192
Target:  5'- cGGcGGCGCcgGCCGCGGC-CGCgguGGUg -3'
miRNA:   3'- cCC-CUGCG--CGGCGUCGuGCGaguCCA- -5'
29561 5' -62.1 NC_006151.1 + 88606 0.67 0.582121
Target:  5'- -aGGACGgGC---GGCGCGCUCAGGc -3'
miRNA:   3'- ccCCUGCgCGgcgUCGUGCGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 88448 0.66 0.631324
Target:  5'- cGGaGACGCGCgUGCGGCGCccgaGCUCGucggccacGGUg -3'
miRNA:   3'- cCC-CUGCGCG-GCGUCGUG----CGAGU--------CCA- -5'
29561 5' -62.1 NC_006151.1 + 88026 0.69 0.429902
Target:  5'- gGGGGAgGCGUCGUAGCGCuGCguguccucgaagaCGGGc -3'
miRNA:   3'- -CCCCUgCGCGGCGUCGUG-CGa------------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 85647 0.71 0.344818
Target:  5'- cGGGGACGCGcCCGCcuCGCGCagCGGcGa -3'
miRNA:   3'- -CCCCUGCGC-GGCGucGUGCGa-GUC-Ca -5'
29561 5' -62.1 NC_006151.1 + 85490 0.76 0.16811
Target:  5'- -aGGACGCGCCGCugcuGCGCGC-CAcGGUg -3'
miRNA:   3'- ccCCUGCGCGGCGu---CGUGCGaGU-CCA- -5'
29561 5' -62.1 NC_006151.1 + 85163 0.66 0.651056
Target:  5'- aGGGGGCcgGCGCCGCgGGCGcCGCcgccccgCuGGg -3'
miRNA:   3'- -CCCCUG--CGCGGCG-UCGU-GCGa------GuCCa -5'
29561 5' -62.1 NC_006151.1 + 84681 0.69 0.44116
Target:  5'- aGGuGGACGagcaGCUGCGGC-CGCUggagcggCAGGUg -3'
miRNA:   3'- -CC-CCUGCg---CGGCGUCGuGCGA-------GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 84426 0.69 0.459695
Target:  5'- aGGcGGCGCGCgGCGGCGCGCg----- -3'
miRNA:   3'- cCC-CUGCGCGgCGUCGUGCGagucca -5'
29561 5' -62.1 NC_006151.1 + 84366 0.67 0.572355
Target:  5'- cGGcGGugauCGCGaUCGCGGCGCGCggggacgggCGGGg -3'
miRNA:   3'- -CC-CCu---GCGC-GGCGUCGUGCGa--------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 84151 0.66 0.621455
Target:  5'- aGGGGcUGUGCCaGCuGCGCGaCUCGGc- -3'
miRNA:   3'- -CCCCuGCGCGG-CGuCGUGC-GAGUCca -5'
29561 5' -62.1 NC_006151.1 + 83853 0.69 0.468665
Target:  5'- cGGaGGAUGCGCauccCGGCGCGCUucCGGGc -3'
miRNA:   3'- -CC-CCUGCGCGgc--GUCGUGCGA--GUCCa -5'
29561 5' -62.1 NC_006151.1 + 83360 0.67 0.572355
Target:  5'- --cGGCGCGCgCGCgGGCGCGCaggcgccgCAGGUg -3'
miRNA:   3'- cccCUGCGCG-GCG-UCGUGCGa-------GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 83258 0.69 0.424762
Target:  5'- --cGuCGCGCCaGCGGCGCcccgaGCUCAGGUa -3'
miRNA:   3'- cccCuGCGCGG-CGUCGUG-----CGAGUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.