Results 41 - 60 of 199 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29561 | 5' | -62.1 | NC_006151.1 | + | 111413 | 0.66 | 0.641193 |
Target: 5'- cGGGGcgggagaccgaGCGCuGCCGCaucucGGCGCGgUcCAGGa -3' miRNA: 3'- -CCCC-----------UGCG-CGGCG-----UCGUGCgA-GUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 134829 | 0.66 | 0.641193 |
Target: 5'- -cGGugGCGaCCGC-GCGCGCacacacgCGGGg -3' miRNA: 3'- ccCCugCGC-GGCGuCGUGCGa------GUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 22328 | 0.66 | 0.64514 |
Target: 5'- cGGGcGACcaGCGCCGCcaauAGCgcugcgagcagcaugGCGCUggCAGGUg -3' miRNA: 3'- -CCC-CUG--CGCGGCG----UCG---------------UGCGA--GUCCA- -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 85163 | 0.66 | 0.651056 |
Target: 5'- aGGGGGCcgGCGCCGCgGGCGcCGCcgccccgCuGGg -3' miRNA: 3'- -CCCCUG--CGCGGCG-UCGU-GCGa------GuCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 138499 | 0.66 | 0.651056 |
Target: 5'- cGGcGGGCGC-CCGCuGCACcuccucgucCUCGGGg -3' miRNA: 3'- -CC-CCUGCGcGGCGuCGUGc--------GAGUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 93572 | 0.66 | 0.631324 |
Target: 5'- cGGGGGCGgGCgCGCcaaagAGCGgGCUCGc-- -3' miRNA: 3'- -CCCCUGCgCG-GCG-----UCGUgCGAGUcca -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 88448 | 0.66 | 0.631324 |
Target: 5'- cGGaGACGCGCgUGCGGCGCccgaGCUCGucggccacGGUg -3' miRNA: 3'- cCC-CUGCGCG-GCGUCGUG----CGAGU--------CCA- -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 17323 | 0.66 | 0.620468 |
Target: 5'- cGGGGgGCGCCGCGucagcucGUGCGuCUCGguGGUg -3' miRNA: 3'- cCCCUgCGCGGCGU-------CGUGC-GAGU--CCA- -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 40143 | 0.66 | 0.620468 |
Target: 5'- cGGcGGCGaCGgccggccCCGCGGCcCGCUCGGGc -3' miRNA: 3'- cCC-CUGC-GC-------GGCGUCGuGCGAGUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 104664 | 0.66 | 0.620468 |
Target: 5'- --cGACGCGgCGC-GCGCGCUCgacgaggGGGUg -3' miRNA: 3'- cccCUGCGCgGCGuCGUGCGAG-------UCCA- -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 57469 | 0.66 | 0.621455 |
Target: 5'- aGGuGcCGCGCCGCGGCG-GCcucgCAGGc -3' miRNA: 3'- cCC-CuGCGCGGCGUCGUgCGa---GUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 84151 | 0.66 | 0.621455 |
Target: 5'- aGGGGcUGUGCCaGCuGCGCGaCUCGGc- -3' miRNA: 3'- -CCCCuGCGCGG-CGuCGUGC-GAGUCca -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 131109 | 0.66 | 0.621455 |
Target: 5'- gGGGGGCcCgGCCGCGGCGCGgg-AGGc -3' miRNA: 3'- -CCCCUGcG-CGGCGUCGUGCgagUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 3141 | 0.66 | 0.621455 |
Target: 5'- cGGGGCGC-CCuCGGCGgGCUCGGc- -3' miRNA: 3'- cCCCUGCGcGGcGUCGUgCGAGUCca -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 4398 | 0.66 | 0.621455 |
Target: 5'- cGGGGGucCGCGgCGCGGCcCGggUAGGc -3' miRNA: 3'- -CCCCU--GCGCgGCGUCGuGCgaGUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 64636 | 0.66 | 0.621455 |
Target: 5'- cGGGGCGCGgCGCccCGCGCaggaaccgCAGGa -3' miRNA: 3'- cCCCUGCGCgGCGucGUGCGa-------GUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 136995 | 0.66 | 0.621455 |
Target: 5'- cGGcGGGCGCGCgCGCAcgGCGCU-GGGc -3' miRNA: 3'- -CC-CCUGCGCG-GCGUcgUGCGAgUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 57049 | 0.66 | 0.630337 |
Target: 5'- gGGGGGCGCaGCUGCucguagggcaccgGGCcgGCGCcgcgCAGGc -3' miRNA: 3'- -CCCCUGCG-CGGCG-------------UCG--UGCGa---GUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 53483 | 0.66 | 0.631324 |
Target: 5'- cGGcaGCGaGCCGUGGCACGCgaaggcCAGGUg -3' miRNA: 3'- -CCccUGCgCGGCGUCGUGCGa-----GUCCA- -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 81582 | 0.66 | 0.631324 |
Target: 5'- aGGGucucgcGCGCGUCGCcggggccgccGGCGCGCagcagCAGGg -3' miRNA: 3'- cCCC------UGCGCGGCG----------UCGUGCGa----GUCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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