Results 81 - 100 of 199 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29561 | 5' | -62.1 | NC_006151.1 | + | 131448 | 0.66 | 0.601746 |
Target: 5'- cGGcGGGCggaaguccggGCGCCGCaccucgcccacgAGCACGUccugCAGGUg -3' miRNA: 3'- -CC-CCUG----------CGCGGCG------------UCGUGCGa---GUCCA- -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 120826 | 0.66 | 0.601746 |
Target: 5'- -uGGACGCGCCGCGcgacGaCACGU--GGGUg -3' miRNA: 3'- ccCCUGCGCGGCGU----C-GUGCGagUCCA- -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 95969 | 0.66 | 0.601746 |
Target: 5'- --cGACGcCGCCGCGGCGCag-CAGGa -3' miRNA: 3'- cccCUGC-GCGGCGUCGUGcgaGUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 94594 | 0.66 | 0.600762 |
Target: 5'- aGGGGGCGCGguCCGC-GCACaugucgaugagcaGCUCcuGGUc -3' miRNA: 3'- -CCCCUGCGC--GGCGuCGUG-------------CGAGu-CCA- -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 28282 | 0.66 | 0.598796 |
Target: 5'- cGGGGACGCGggcCCGgcucccccauuggcCGGCGCGUcccCGGGg -3' miRNA: 3'- -CCCCUGCGC---GGC--------------GUCGUGCGa--GUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 89718 | 0.66 | 0.59192 |
Target: 5'- cGGcGGCGCcgGCCGCGGC-CGCgguGGUg -3' miRNA: 3'- cCC-CUGCG--CGGCGUCGuGCGaguCCA- -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 82608 | 0.66 | 0.59192 |
Target: 5'- gGGuGGGCccgcgcgcggGCGCCGCGGUggGCgCGGGa -3' miRNA: 3'- -CC-CCUG----------CGCGGCGUCGugCGaGUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 130475 | 0.66 | 0.611593 |
Target: 5'- aGGGcGAUGgccUGCCGCAGCGCGCg----- -3' miRNA: 3'- -CCC-CUGC---GCGGCGUCGUGCGagucca -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 65809 | 0.66 | 0.611593 |
Target: 5'- -cGGACGUGCCGCGGUggaugggcggccGCGC-CAGc- -3' miRNA: 3'- ccCCUGCGCGGCGUCG------------UGCGaGUCca -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 103290 | 0.66 | 0.611593 |
Target: 5'- aGGaGACGCGCgCGCGGCuCGCgCGGc- -3' miRNA: 3'- cCC-CUGCGCG-GCGUCGuGCGaGUCca -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 104664 | 0.66 | 0.620468 |
Target: 5'- --cGACGCGgCGC-GCGCGCUCgacgaggGGGUg -3' miRNA: 3'- cccCUGCGCgGCGuCGUGCGAG-------UCCA- -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 40143 | 0.66 | 0.620468 |
Target: 5'- cGGcGGCGaCGgccggccCCGCGGCcCGCUCGGGc -3' miRNA: 3'- cCC-CUGC-GC-------GGCGUCGuGCGAGUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 17323 | 0.66 | 0.620468 |
Target: 5'- cGGGGgGCGCCGCGucagcucGUGCGuCUCGguGGUg -3' miRNA: 3'- cCCCUgCGCGGCGU-------CGUGC-GAGU--CCA- -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 91564 | 0.66 | 0.611593 |
Target: 5'- cGGGGCGaugGCgGCGcGCGCGUgcucCAGGUg -3' miRNA: 3'- cCCCUGCg--CGgCGU-CGUGCGa---GUCCA- -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 131850 | 0.66 | 0.611593 |
Target: 5'- cGGGGcggccgagacGCGCGCCgGCGGCGuCGggucgCAGGg -3' miRNA: 3'- -CCCC----------UGCGCGG-CGUCGU-GCga---GUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 94359 | 0.66 | 0.611593 |
Target: 5'- uGGGACGUGUaaaaGUAcuccauggcGCGCGCUCacAGGUg -3' miRNA: 3'- cCCCUGCGCGg---CGU---------CGUGCGAG--UCCA- -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 54850 | 0.66 | 0.611593 |
Target: 5'- cGGGGA-GUGCCuggugcucugGCAGC-CGCUguGGc -3' miRNA: 3'- -CCCCUgCGCGG----------CGUCGuGCGAguCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 33051 | 0.66 | 0.611593 |
Target: 5'- gGGGGAUGCuGCCGCggguGGCAUGagacggaGGGg -3' miRNA: 3'- -CCCCUGCG-CGGCG----UCGUGCgag----UCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 119046 | 0.66 | 0.611593 |
Target: 5'- -aGGACggcgGCGCCGCGGC-CGCcuccgCGGGc -3' miRNA: 3'- ccCCUG----CGCGGCGUCGuGCGa----GUCCa -5' |
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29561 | 5' | -62.1 | NC_006151.1 | + | 113106 | 0.66 | 0.611593 |
Target: 5'- cGGGGGCgGgGCCGCGG-ACGCggacgccgcCGGGc -3' miRNA: 3'- -CCCCUG-CgCGGCGUCgUGCGa--------GUCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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