miRNA display CGI


Results 101 - 120 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29561 5' -62.1 NC_006151.1 + 129091 0.67 0.572355
Target:  5'- cGGGGGCGUaguuGCUGC-GCACGagcgcCAGGg -3'
miRNA:   3'- -CCCCUGCG----CGGCGuCGUGCga---GUCCa -5'
29561 5' -62.1 NC_006151.1 + 103907 0.67 0.572355
Target:  5'- uGGaGGugGCGCgCGCGGC-CGC-CGuGGa -3'
miRNA:   3'- -CC-CCugCGCG-GCGUCGuGCGaGU-CCa -5'
29561 5' -62.1 NC_006151.1 + 83360 0.67 0.572355
Target:  5'- --cGGCGCGCgCGCgGGCGCGCaggcgccgCAGGUg -3'
miRNA:   3'- cccCUGCGCG-GCG-UCGUGCGa-------GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 77939 0.67 0.572355
Target:  5'- gGGcGGGCGCGCgGCcccCACGCUgAGcGUg -3'
miRNA:   3'- -CC-CCUGCGCGgCGuc-GUGCGAgUC-CA- -5'
29561 5' -62.1 NC_006151.1 + 61767 0.67 0.572355
Target:  5'- cGGGGGCcgugGUGCUGCGGCGCGaggCcGGc -3'
miRNA:   3'- -CCCCUG----CGCGGCGUCGUGCga-GuCCa -5'
29561 5' -62.1 NC_006151.1 + 94594 0.66 0.600762
Target:  5'- aGGGGGCGCGguCCGC-GCACaugucgaugagcaGCUCcuGGUc -3'
miRNA:   3'- -CCCCUGCGC--GGCGuCGUG-------------CGAGu-CCA- -5'
29561 5' -62.1 NC_006151.1 + 95969 0.66 0.601746
Target:  5'- --cGACGcCGCCGCGGCGCag-CAGGa -3'
miRNA:   3'- cccCUGC-GCGGCGUCGUGcgaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 94359 0.66 0.611593
Target:  5'- uGGGACGUGUaaaaGUAcuccauggcGCGCGCUCacAGGUg -3'
miRNA:   3'- cCCCUGCGCGg---CGU---------CGUGCGAG--UCCA- -5'
29561 5' -62.1 NC_006151.1 + 54850 0.66 0.611593
Target:  5'- cGGGGA-GUGCCuggugcucugGCAGC-CGCUguGGc -3'
miRNA:   3'- -CCCCUgCGCGG----------CGUCGuGCGAguCCa -5'
29561 5' -62.1 NC_006151.1 + 33051 0.66 0.611593
Target:  5'- gGGGGAUGCuGCCGCggguGGCAUGagacggaGGGg -3'
miRNA:   3'- -CCCCUGCG-CGGCG----UCGUGCgag----UCCa -5'
29561 5' -62.1 NC_006151.1 + 119046 0.66 0.611593
Target:  5'- -aGGACggcgGCGCCGCGGC-CGCcuccgCGGGc -3'
miRNA:   3'- ccCCUG----CGCGGCGUCGuGCGa----GUCCa -5'
29561 5' -62.1 NC_006151.1 + 113106 0.66 0.611593
Target:  5'- cGGGGGCgGgGCCGCGG-ACGCggacgccgcCGGGc -3'
miRNA:   3'- -CCCCUG-CgCGGCGUCgUGCGa--------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 103290 0.66 0.611593
Target:  5'- aGGaGACGCGCgCGCGGCuCGCgCGGc- -3'
miRNA:   3'- cCC-CUGCGCG-GCGUCGuGCGaGUCca -5'
29561 5' -62.1 NC_006151.1 + 65809 0.66 0.611593
Target:  5'- -cGGACGUGCCGCGGUggaugggcggccGCGC-CAGc- -3'
miRNA:   3'- ccCCUGCGCGGCGUCG------------UGCGaGUCca -5'
29561 5' -62.1 NC_006151.1 + 130475 0.66 0.611593
Target:  5'- aGGGcGAUGgccUGCCGCAGCGCGCg----- -3'
miRNA:   3'- -CCC-CUGC---GCGGCGUCGUGCGagucca -5'
29561 5' -62.1 NC_006151.1 + 138696 0.66 0.601746
Target:  5'- -cGGACGCGCugagcccggCGCuGCGCGCcgcgcgCGGGUc -3'
miRNA:   3'- ccCCUGCGCG---------GCGuCGUGCGa-----GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 105284 0.66 0.601746
Target:  5'- -uGGGCGCGCgCGCGGCcGCGC-CGGc- -3'
miRNA:   3'- ccCCUGCGCG-GCGUCG-UGCGaGUCca -5'
29561 5' -62.1 NC_006151.1 + 19126 0.66 0.601746
Target:  5'- cGGGGGCGCGCgcgCGUAGUACcaGUcCAGcGUg -3'
miRNA:   3'- -CCCCUGCGCG---GCGUCGUG--CGaGUC-CA- -5'
29561 5' -62.1 NC_006151.1 + 131448 0.66 0.601746
Target:  5'- cGGcGGGCggaaguccggGCGCCGCaccucgcccacgAGCACGUccugCAGGUg -3'
miRNA:   3'- -CC-CCUG----------CGCGGCG------------UCGUGCGa---GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 120826 0.66 0.601746
Target:  5'- -uGGACGCGCCGCGcgacGaCACGU--GGGUg -3'
miRNA:   3'- ccCCUGCGCGGCGU----C-GUGCGagUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.