miRNA display CGI


Results 121 - 140 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29561 5' -62.1 NC_006151.1 + 19389 0.67 0.562629
Target:  5'- uGGGcGugGC-CCGCcGgACGgUCAGGUg -3'
miRNA:   3'- -CCC-CugCGcGGCGuCgUGCgAGUCCA- -5'
29561 5' -62.1 NC_006151.1 + 100888 0.67 0.552948
Target:  5'- uGGaGGugcUGCGCCGCGGCGCGCgcgCGc-- -3'
miRNA:   3'- -CC-CCu--GCGCGGCGUCGUGCGa--GUcca -5'
29561 5' -62.1 NC_006151.1 + 127864 0.67 0.580165
Target:  5'- aGGGGGCGCcgcccGCCGCcguccaccuccAGCucgucguccgaGCUCGGGg -3'
miRNA:   3'- -CCCCUGCG-----CGGCG-----------UCGug---------CGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 131051 0.67 0.581143
Target:  5'- cGGGGcCGgaggccgucuccaUGCCGCggagGGCGCGCgaCAGGUa -3'
miRNA:   3'- -CCCCuGC-------------GCGGCG----UCGUGCGa-GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 88606 0.67 0.582121
Target:  5'- -aGGACGgGC---GGCGCGCUCAGGc -3'
miRNA:   3'- ccCCUGCgCGgcgUCGUGCGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 103290 0.66 0.611593
Target:  5'- aGGaGACGCGCgCGCGGCuCGCgCGGc- -3'
miRNA:   3'- cCC-CUGCGCG-GCGUCGuGCGaGUCca -5'
29561 5' -62.1 NC_006151.1 + 65809 0.66 0.611593
Target:  5'- -cGGACGUGCCGCGGUggaugggcggccGCGC-CAGc- -3'
miRNA:   3'- ccCCUGCGCGGCGUCG------------UGCGaGUCca -5'
29561 5' -62.1 NC_006151.1 + 130475 0.66 0.611593
Target:  5'- aGGGcGAUGgccUGCCGCAGCGCGCg----- -3'
miRNA:   3'- -CCC-CUGC---GCGGCGUCGUGCGagucca -5'
29561 5' -62.1 NC_006151.1 + 138696 0.66 0.601746
Target:  5'- -cGGACGCGCugagcccggCGCuGCGCGCcgcgcgCGGGUc -3'
miRNA:   3'- ccCCUGCGCG---------GCGuCGUGCGa-----GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 105284 0.66 0.601746
Target:  5'- -uGGGCGCGCgCGCGGCcGCGC-CGGc- -3'
miRNA:   3'- ccCCUGCGCG-GCGUCG-UGCGaGUCca -5'
29561 5' -62.1 NC_006151.1 + 19126 0.66 0.601746
Target:  5'- cGGGGGCGCGCgcgCGUAGUACcaGUcCAGcGUg -3'
miRNA:   3'- -CCCCUGCGCG---GCGUCGUG--CGaGUC-CA- -5'
29561 5' -62.1 NC_006151.1 + 131448 0.66 0.601746
Target:  5'- cGGcGGGCggaaguccggGCGCCGCaccucgcccacgAGCACGUccugCAGGUg -3'
miRNA:   3'- -CC-CCUG----------CGCGGCG------------UCGUGCGa---GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 120826 0.66 0.601746
Target:  5'- -uGGACGCGCCGCGcgacGaCACGU--GGGUg -3'
miRNA:   3'- ccCCUGCGCGGCGU----C-GUGCGagUCCA- -5'
29561 5' -62.1 NC_006151.1 + 95969 0.66 0.601746
Target:  5'- --cGACGcCGCCGCGGCGCag-CAGGa -3'
miRNA:   3'- cccCUGC-GCGGCGUCGUGcgaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 94594 0.66 0.600762
Target:  5'- aGGGGGCGCGguCCGC-GCACaugucgaugagcaGCUCcuGGUc -3'
miRNA:   3'- -CCCCUGCGC--GGCGuCGUG-------------CGAGu-CCA- -5'
29561 5' -62.1 NC_006151.1 + 28282 0.66 0.598796
Target:  5'- cGGGGACGCGggcCCGgcucccccauuggcCGGCGCGUcccCGGGg -3'
miRNA:   3'- -CCCCUGCGC---GGC--------------GUCGUGCGa--GUCCa -5'
29561 5' -62.1 NC_006151.1 + 89718 0.66 0.59192
Target:  5'- cGGcGGCGCcgGCCGCGGC-CGCgguGGUg -3'
miRNA:   3'- cCC-CUGCG--CGGCGUCGuGCGaguCCA- -5'
29561 5' -62.1 NC_006151.1 + 82608 0.66 0.59192
Target:  5'- gGGuGGGCccgcgcgcggGCGCCGCGGUggGCgCGGGa -3'
miRNA:   3'- -CC-CCUG----------CGCGGCGUCGugCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 33960 0.67 0.582121
Target:  5'- cGGGGCGgGaCGCGGCGCccGCgCGGGg -3'
miRNA:   3'- cCCCUGCgCgGCGUCGUG--CGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 30760 0.67 0.582121
Target:  5'- cGGGGCGgGg-GCAGCACucagcgaagGCUCAGGg -3'
miRNA:   3'- cCCCUGCgCggCGUCGUG---------CGAGUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.