miRNA display CGI


Results 21 - 40 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29561 5' -62.1 NC_006151.1 + 84151 0.66 0.621455
Target:  5'- aGGGGcUGUGCCaGCuGCGCGaCUCGGc- -3'
miRNA:   3'- -CCCCuGCGCGG-CGuCGUGC-GAGUCca -5'
29561 5' -62.1 NC_006151.1 + 131109 0.66 0.621455
Target:  5'- gGGGGGCcCgGCCGCGGCGCGgg-AGGc -3'
miRNA:   3'- -CCCCUGcG-CGGCGUCGUGCgagUCCa -5'
29561 5' -62.1 NC_006151.1 + 3141 0.66 0.621455
Target:  5'- cGGGGCGC-CCuCGGCGgGCUCGGc- -3'
miRNA:   3'- cCCCUGCGcGGcGUCGUgCGAGUCca -5'
29561 5' -62.1 NC_006151.1 + 4398 0.66 0.621455
Target:  5'- cGGGGGucCGCGgCGCGGCcCGggUAGGc -3'
miRNA:   3'- -CCCCU--GCGCgGCGUCGuGCgaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 64636 0.66 0.621455
Target:  5'- cGGGGCGCGgCGCccCGCGCaggaaccgCAGGa -3'
miRNA:   3'- cCCCUGCGCgGCGucGUGCGa-------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 136995 0.66 0.621455
Target:  5'- cGGcGGGCGCGCgCGCAcgGCGCU-GGGc -3'
miRNA:   3'- -CC-CCUGCGCG-GCGUcgUGCGAgUCCa -5'
29561 5' -62.1 NC_006151.1 + 17323 0.66 0.620468
Target:  5'- cGGGGgGCGCCGCGucagcucGUGCGuCUCGguGGUg -3'
miRNA:   3'- cCCCUgCGCGGCGU-------CGUGC-GAGU--CCA- -5'
29561 5' -62.1 NC_006151.1 + 40143 0.66 0.620468
Target:  5'- cGGcGGCGaCGgccggccCCGCGGCcCGCUCGGGc -3'
miRNA:   3'- cCC-CUGC-GC-------GGCGUCGuGCGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 104664 0.66 0.620468
Target:  5'- --cGACGCGgCGC-GCGCGCUCgacgaggGGGUg -3'
miRNA:   3'- cccCUGCGCgGCGuCGUGCGAG-------UCCA- -5'
29561 5' -62.1 NC_006151.1 + 130475 0.66 0.611593
Target:  5'- aGGGcGAUGgccUGCCGCAGCGCGCg----- -3'
miRNA:   3'- -CCC-CUGC---GCGGCGUCGUGCGagucca -5'
29561 5' -62.1 NC_006151.1 + 65809 0.66 0.611593
Target:  5'- -cGGACGUGCCGCGGUggaugggcggccGCGC-CAGc- -3'
miRNA:   3'- ccCCUGCGCGGCGUCG------------UGCGaGUCca -5'
29561 5' -62.1 NC_006151.1 + 103290 0.66 0.611593
Target:  5'- aGGaGACGCGCgCGCGGCuCGCgCGGc- -3'
miRNA:   3'- cCC-CUGCGCG-GCGUCGuGCGaGUCca -5'
29561 5' -62.1 NC_006151.1 + 113106 0.66 0.611593
Target:  5'- cGGGGGCgGgGCCGCGG-ACGCggacgccgcCGGGc -3'
miRNA:   3'- -CCCCUG-CgCGGCGUCgUGCGa--------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 119046 0.66 0.611593
Target:  5'- -aGGACggcgGCGCCGCGGC-CGCcuccgCGGGc -3'
miRNA:   3'- ccCCUG----CGCGGCGUCGuGCGa----GUCCa -5'
29561 5' -62.1 NC_006151.1 + 33051 0.66 0.611593
Target:  5'- gGGGGAUGCuGCCGCggguGGCAUGagacggaGGGg -3'
miRNA:   3'- -CCCCUGCG-CGGCG----UCGUGCgag----UCCa -5'
29561 5' -62.1 NC_006151.1 + 54850 0.66 0.611593
Target:  5'- cGGGGA-GUGCCuggugcucugGCAGC-CGCUguGGc -3'
miRNA:   3'- -CCCCUgCGCGG----------CGUCGuGCGAguCCa -5'
29561 5' -62.1 NC_006151.1 + 94359 0.66 0.611593
Target:  5'- uGGGACGUGUaaaaGUAcuccauggcGCGCGCUCacAGGUg -3'
miRNA:   3'- cCCCUGCGCGg---CGU---------CGUGCGAG--UCCA- -5'
29561 5' -62.1 NC_006151.1 + 131850 0.66 0.611593
Target:  5'- cGGGGcggccgagacGCGCGCCgGCGGCGuCGggucgCAGGg -3'
miRNA:   3'- -CCCC----------UGCGCGG-CGUCGU-GCga---GUCCa -5'
29561 5' -62.1 NC_006151.1 + 91564 0.66 0.611593
Target:  5'- cGGGGCGaugGCgGCGcGCGCGUgcucCAGGUg -3'
miRNA:   3'- cCCCUGCg--CGgCGU-CGUGCGa---GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 105284 0.66 0.601746
Target:  5'- -uGGGCGCGCgCGCGGCcGCGC-CGGc- -3'
miRNA:   3'- ccCCUGCGCG-GCGUCG-UGCGaGUCca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.