miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29562 3' -55.4 NC_006151.1 + 73706 0.8 0.239007
Target:  5'- cGCCGCGUGCUGGGccacGGGCUgGCGCa- -3'
miRNA:   3'- -UGGUGCACGACCUa---CUUGAgCGCGag -5'
29562 3' -55.4 NC_006151.1 + 107065 0.79 0.250995
Target:  5'- uGCCuCGUGCUGG-UGGACUCGCaGCUg -3'
miRNA:   3'- -UGGuGCACGACCuACUUGAGCG-CGAg -5'
29562 3' -55.4 NC_006151.1 + 130324 0.76 0.381595
Target:  5'- cGCCGCGcGCUcGGG-GAGCUCGCGCg- -3'
miRNA:   3'- -UGGUGCaCGA-CCUaCUUGAGCGCGag -5'
29562 3' -55.4 NC_006151.1 + 3787 0.75 0.416154
Target:  5'- gACUugGUGCUGGAgcUGGACUUgGUGCUg -3'
miRNA:   3'- -UGGugCACGACCU--ACUUGAG-CGCGAg -5'
29562 3' -55.4 NC_006151.1 + 45194 0.75 0.425089
Target:  5'- cACCACGgacgGCgacgGGGUGcGC-CGCGCUCg -3'
miRNA:   3'- -UGGUGCa---CGa---CCUACuUGaGCGCGAG- -5'
29562 3' -55.4 NC_006151.1 + 71795 0.75 0.443296
Target:  5'- uGCCGCaccaGCUGGccGAGCUCGCGCg- -3'
miRNA:   3'- -UGGUGca--CGACCuaCUUGAGCGCGag -5'
29562 3' -55.4 NC_006151.1 + 103274 0.73 0.550327
Target:  5'- gGCCACGUGCUGaGccagGAgacgcgcgcgcgGCUCGCGCg- -3'
miRNA:   3'- -UGGUGCACGAC-Cua--CU------------UGAGCGCGag -5'
29562 3' -55.4 NC_006151.1 + 121928 0.72 0.570744
Target:  5'- gACCGCGUGCUGGggGcGCUgGcCGC-Cg -3'
miRNA:   3'- -UGGUGCACGACCuaCuUGAgC-GCGaG- -5'
29562 3' -55.4 NC_006151.1 + 132307 0.72 0.601685
Target:  5'- uCCGCGUGCaGGcgccacgaGAGCUCGCGCg- -3'
miRNA:   3'- uGGUGCACGaCCua------CUUGAGCGCGag -5'
29562 3' -55.4 NC_006151.1 + 85324 0.72 0.612056
Target:  5'- cGCUACGcGCUGGA-GGGCcacagCGUGCUCg -3'
miRNA:   3'- -UGGUGCaCGACCUaCUUGa----GCGCGAG- -5'
29562 3' -55.4 NC_006151.1 + 114430 0.71 0.653612
Target:  5'- cACCGCGUGCUGGAccgccugcucgGGGCcUGCGC-Cg -3'
miRNA:   3'- -UGGUGCACGACCUa----------CUUGaGCGCGaG- -5'
29562 3' -55.4 NC_006151.1 + 106337 0.71 0.671219
Target:  5'- gACCGCGcGCUGGAcgcgguggacacgcUGGACgcgggCGCGCg- -3'
miRNA:   3'- -UGGUGCaCGACCU--------------ACUUGa----GCGCGag -5'
29562 3' -55.4 NC_006151.1 + 122677 0.71 0.674318
Target:  5'- cGCCGagGUGCgcgcGGcggccgugGAGCUCGCGCUCu -3'
miRNA:   3'- -UGGUg-CACGa---CCua------CUUGAGCGCGAG- -5'
29562 3' -55.4 NC_006151.1 + 60791 0.7 0.694881
Target:  5'- cACCACGUGCacGcUGGGCUCGCcgcgcaGCUCc -3'
miRNA:   3'- -UGGUGCACGacCuACUUGAGCG------CGAG- -5'
29562 3' -55.4 NC_006151.1 + 116973 0.7 0.69897
Target:  5'- uCCACGUcGCUGGAcgUGAggcGCUggugccgcagcaccaCGCGCUCc -3'
miRNA:   3'- uGGUGCA-CGACCU--ACU---UGA---------------GCGCGAG- -5'
29562 3' -55.4 NC_006151.1 + 61462 0.7 0.739251
Target:  5'- cGCCAUGUGCgGGccgcgcaacgccgagGccgUGAGCUgGCGCUCc -3'
miRNA:   3'- -UGGUGCACGaCC---------------U---ACUUGAgCGCGAG- -5'
29562 3' -55.4 NC_006151.1 + 54814 0.69 0.764646
Target:  5'- -gCGCGUGCUGGcgc-GCgaCGCGCUCa -3'
miRNA:   3'- ugGUGCACGACCuacuUGa-GCGCGAG- -5'
29562 3' -55.4 NC_006151.1 + 95545 0.69 0.787364
Target:  5'- gGCCAUGUcCUGGAUGGgcagggACUCgacgccgaggccgagGCGCUCc -3'
miRNA:   3'- -UGGUGCAcGACCUACU------UGAG---------------CGCGAG- -5'
29562 3' -55.4 NC_006151.1 + 19421 0.68 0.811034
Target:  5'- gACCACc-GCUccgGGGUGAcgaugggcgGCUCGCGCUg -3'
miRNA:   3'- -UGGUGcaCGA---CCUACU---------UGAGCGCGAg -5'
29562 3' -55.4 NC_006151.1 + 113330 0.68 0.819845
Target:  5'- gGCC-CGUGCUGGc---GCUgGCGCUg -3'
miRNA:   3'- -UGGuGCACGACCuacuUGAgCGCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.