miRNA display CGI


Results 21 - 40 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29562 5' -66.4 NC_006151.1 + 88126 0.66 0.47674
Target:  5'- aGCGGGCGgGCG-CUCCGcacguugaGCagGCCGGg -3'
miRNA:   3'- -CGCUCGCgCGCaGGGGC--------CGg-CGGCCg -5'
29562 5' -66.4 NC_006151.1 + 4232 0.66 0.47674
Target:  5'- gGCGGGCGCGgG-CagCCGGa-GCgGGCa -3'
miRNA:   3'- -CGCUCGCGCgCaGg-GGCCggCGgCCG- -5'
29562 5' -66.4 NC_006151.1 + 36111 0.66 0.47674
Target:  5'- cCGAGgcCGC-CGUCCUcgCGGCCG-CGGCc -3'
miRNA:   3'- cGCUC--GCGcGCAGGG--GCCGGCgGCCG- -5'
29562 5' -66.4 NC_006151.1 + 112012 0.66 0.47674
Target:  5'- cGCGgcGGCG-GCGauuUUCCCGGCgggagcugggGCCGGCg -3'
miRNA:   3'- -CGC--UCGCgCGC---AGGGGCCGg---------CGGCCG- -5'
29562 5' -66.4 NC_006151.1 + 24212 0.66 0.47674
Target:  5'- gGCGAgccacGCGCGCGUaCUgcguguaCGGCUGgCGGUg -3'
miRNA:   3'- -CGCU-----CGCGCGCA-GGg------GCCGGCgGCCG- -5'
29562 5' -66.4 NC_006151.1 + 89566 0.66 0.47674
Target:  5'- cGCGAGgcugaUGgGCacgCCCaugGGCuCGCCGGCg -3'
miRNA:   3'- -CGCUC-----GCgCGca-GGGg--CCG-GCGGCCG- -5'
29562 5' -66.4 NC_006151.1 + 121914 0.66 0.47674
Target:  5'- cGCGGGCcgagggggaccGCGUGcugggggCgCUGGCCGCCgccGGCg -3'
miRNA:   3'- -CGCUCG-----------CGCGCa------GgGGCCGGCGG---CCG- -5'
29562 5' -66.4 NC_006151.1 + 87364 0.66 0.475867
Target:  5'- gGCGGcccccgucGCGCaCGUCCCCGcccagguggucccGCagcaGCCGGUg -3'
miRNA:   3'- -CGCU--------CGCGcGCAGGGGC-------------CGg---CGGCCG- -5'
29562 5' -66.4 NC_006151.1 + 114337 0.66 0.471513
Target:  5'- cGCGAcGUGCGCGUgcucuucuucgaggaCCCCGaCgCGCagGGCg -3'
miRNA:   3'- -CGCU-CGCGCGCA---------------GGGGCcG-GCGg-CCG- -5'
29562 5' -66.4 NC_006151.1 + 2365 0.66 0.468044
Target:  5'- gGCGcagaaGGCGCGCaa-CUCGGCCGgCaGGCc -3'
miRNA:   3'- -CGC-----UCGCGCGcagGGGCCGGCgG-CCG- -5'
29562 5' -66.4 NC_006151.1 + 35446 0.66 0.468044
Target:  5'- cGCGAGgaaguuccuCGCGaaaUCCCauuGGCCGgCGGCc -3'
miRNA:   3'- -CGCUC---------GCGCgc-AGGGg--CCGGCgGCCG- -5'
29562 5' -66.4 NC_006151.1 + 88654 0.66 0.468044
Target:  5'- aGCGAGaCGUugGCG-CUCCGgaccucgguGCCGuuGGCg -3'
miRNA:   3'- -CGCUC-GCG--CGCaGGGGC---------CGGCggCCG- -5'
29562 5' -66.4 NC_006151.1 + 95663 0.66 0.468044
Target:  5'- aGCGuccacuugacGGCGCGCucgccGUCCagGuGCCGCUGGUa -3'
miRNA:   3'- -CGC----------UCGCGCG-----CAGGggC-CGGCGGCCG- -5'
29562 5' -66.4 NC_006151.1 + 97373 0.66 0.468044
Target:  5'- gGCGGGCGCgGCGggggCgUCGGCCucguCCGuGCc -3'
miRNA:   3'- -CGCUCGCG-CGCa---GgGGCCGGc---GGC-CG- -5'
29562 5' -66.4 NC_006151.1 + 101837 0.66 0.468044
Target:  5'- gGCGGcCGcCGCccccgCCCCGGCaC-CCGGCg -3'
miRNA:   3'- -CGCUcGC-GCGca---GGGGCCG-GcGGCCG- -5'
29562 5' -66.4 NC_006151.1 + 133327 0.66 0.468044
Target:  5'- uCGAG-GCGCG--CCgGGCgGCCGGUu -3'
miRNA:   3'- cGCUCgCGCGCagGGgCCGgCGGCCG- -5'
29562 5' -66.4 NC_006151.1 + 137138 0.66 0.468044
Target:  5'- cGCGGcGCGaCGCGgcgCCggagaUGGCCgcgcacgaGCCGGCg -3'
miRNA:   3'- -CGCU-CGC-GCGCa--GGg----GCCGG--------CGGCCG- -5'
29562 5' -66.4 NC_006151.1 + 64220 0.66 0.468044
Target:  5'- cGUGGGCGCcucgGCGUaCagGGCCGCgaCGGCg -3'
miRNA:   3'- -CGCUCGCG----CGCAgGggCCGGCG--GCCG- -5'
29562 5' -66.4 NC_006151.1 + 86081 0.66 0.468044
Target:  5'- cCGcGCGCGCG-CCgCC-GCCGCCauggGGCc -3'
miRNA:   3'- cGCuCGCGCGCaGG-GGcCGGCGG----CCG- -5'
29562 5' -66.4 NC_006151.1 + 36641 0.66 0.468044
Target:  5'- gGCG-GCG-GCGgcgCCCCcuCCGCCGGa -3'
miRNA:   3'- -CGCuCGCgCGCa--GGGGccGGCGGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.