miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29563 3' -58.1 NC_006151.1 + 89166 0.82 0.142553
Target:  5'- uCGGGcGAgGCGGGCGCGGggGUCGGGGGc -3'
miRNA:   3'- -GCCU-CUgUGCCCGCGCUa-CAGCUCCU- -5'
29563 3' -58.1 NC_006151.1 + 129492 0.8 0.191974
Target:  5'- uCGGAGggcaGCGCGGGCGCGAUGaCGAGc- -3'
miRNA:   3'- -GCCUC----UGUGCCCGCGCUACaGCUCcu -5'
29563 3' -58.1 NC_006151.1 + 80834 0.77 0.274258
Target:  5'- cCGG-GACACGGGCGCGAgccgcGUCGAcGuGAa -3'
miRNA:   3'- -GCCuCUGUGCCCGCGCUa----CAGCU-C-CU- -5'
29563 3' -58.1 NC_006151.1 + 130413 0.77 0.274258
Target:  5'- cCGcGAG-CGCGGGCGCGccgaccGUCGAGGAc -3'
miRNA:   3'- -GC-CUCuGUGCCCGCGCua----CAGCUCCU- -5'
29563 3' -58.1 NC_006151.1 + 118546 0.77 0.286494
Target:  5'- aCGGGGGCGCGGGCaCGGUGUccaucaacgggcaCGAGGc -3'
miRNA:   3'- -GCCUCUGUGCCCGcGCUACA-------------GCUCCu -5'
29563 3' -58.1 NC_006151.1 + 97241 0.77 0.28715
Target:  5'- cCGGGuGGCGCGGcCGCGcAUGUCGGGGGc -3'
miRNA:   3'- -GCCU-CUGUGCCcGCGC-UACAGCUCCU- -5'
29563 3' -58.1 NC_006151.1 + 42796 0.76 0.314352
Target:  5'- gCGGGGugGCGGGaCGCGucgaggucGUGUgGGGGAg -3'
miRNA:   3'- -GCCUCugUGCCC-GCGC--------UACAgCUCCU- -5'
29563 3' -58.1 NC_006151.1 + 84774 0.75 0.336004
Target:  5'- aGGcGGACGCGGcGCGCGccGcCGAGGAg -3'
miRNA:   3'- gCC-UCUGUGCC-CGCGCuaCaGCUCCU- -5'
29563 3' -58.1 NC_006151.1 + 63514 0.75 0.351033
Target:  5'- uGGGGGCGCGcGGgGCG--GUCGGGGAa -3'
miRNA:   3'- gCCUCUGUGC-CCgCGCuaCAGCUCCU- -5'
29563 3' -58.1 NC_006151.1 + 29462 0.75 0.358725
Target:  5'- gCGGAGGgaGCGGGCGCGccGggaGAGGAa -3'
miRNA:   3'- -GCCUCUg-UGCCCGCGCuaCag-CUCCU- -5'
29563 3' -58.1 NC_006151.1 + 46007 0.74 0.398919
Target:  5'- uGGAGACGCccguggaggGGGCGacgGAUGUCGAcGGGg -3'
miRNA:   3'- gCCUCUGUG---------CCCGCg--CUACAGCU-CCU- -5'
29563 3' -58.1 NC_006151.1 + 96731 0.74 0.407297
Target:  5'- aGGAGGCgGCGGGCGCGA---CGAcGGAg -3'
miRNA:   3'- gCCUCUG-UGCCCGCGCUacaGCU-CCU- -5'
29563 3' -58.1 NC_006151.1 + 33082 0.73 0.441883
Target:  5'- aGGGGGCGaGGGCGgGcgGUgGAGGGg -3'
miRNA:   3'- gCCUCUGUgCCCGCgCuaCAgCUCCU- -5'
29563 3' -58.1 NC_006151.1 + 103667 0.73 0.450787
Target:  5'- gCGGAGAagGCGGcGCGCGcgG-CGGGGGu -3'
miRNA:   3'- -GCCUCUg-UGCC-CGCGCuaCaGCUCCU- -5'
29563 3' -58.1 NC_006151.1 + 125640 0.73 0.450787
Target:  5'- ---cGGCACGGGCGUGA--UCGAGGGc -3'
miRNA:   3'- gccuCUGUGCCCGCGCUacAGCUCCU- -5'
29563 3' -58.1 NC_006151.1 + 110667 0.73 0.459788
Target:  5'- gGGGGAUugGGGCccaaagacgcgGCGGUGgggagaUCGGGGAa -3'
miRNA:   3'- gCCUCUGugCCCG-----------CGCUAC------AGCUCCU- -5'
29563 3' -58.1 NC_006151.1 + 103218 0.73 0.468883
Target:  5'- aGGAGACGCGcgugcGCGCGAUG--GAGGAc -3'
miRNA:   3'- gCCUCUGUGCc----CGCGCUACagCUCCU- -5'
29563 3' -58.1 NC_006151.1 + 90753 0.73 0.468883
Target:  5'- uCGGGGGCgGCGGGCaCGGUGgCGGGGu -3'
miRNA:   3'- -GCCUCUG-UGCCCGcGCUACaGCUCCu -5'
29563 3' -58.1 NC_006151.1 + 117196 0.72 0.495764
Target:  5'- gGGGGGCgucguaguaguagACGGGCGCGgcGUCGAcGAc -3'
miRNA:   3'- gCCUCUG-------------UGCCCGCGCuaCAGCUcCU- -5'
29563 3' -58.1 NC_006151.1 + 23013 0.72 0.515657
Target:  5'- uGGGGGCGCGGGgGUGGUG--GAGGc -3'
miRNA:   3'- gCCUCUGUGCCCgCGCUACagCUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.