miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29565 5' -59.2 NC_006151.1 + 95120 0.66 0.787826
Target:  5'- -gCGAUGGCGGCgUUGAGGcgccgcGCCgccGGGu -3'
miRNA:   3'- aaGCUGCUGCCGgAGCUCC------UGGa--CCU- -5'
29565 5' -59.2 NC_006151.1 + 130268 0.66 0.778775
Target:  5'- -cCGGCGcGCGGCCcCGAGG-CCgcgGGc -3'
miRNA:   3'- aaGCUGC-UGCCGGaGCUCCuGGa--CCu -5'
29565 5' -59.2 NC_006151.1 + 122945 0.66 0.778775
Target:  5'- -cCGACGGCGGCgCcgCGGGGGgCgcGGAc -3'
miRNA:   3'- aaGCUGCUGCCG-Ga-GCUCCUgGa-CCU- -5'
29565 5' -59.2 NC_006151.1 + 49148 0.66 0.778775
Target:  5'- -cCGcccACGGCuGCCUgGAGG-CCUGGGc -3'
miRNA:   3'- aaGC---UGCUGcCGGAgCUCCuGGACCU- -5'
29565 5' -59.2 NC_006151.1 + 3385 0.66 0.778775
Target:  5'- -gCGGCGAgGGCCgccUCgGAGGGCCgcggcgugUGGGu -3'
miRNA:   3'- aaGCUGCUgCCGG---AG-CUCCUGG--------ACCU- -5'
29565 5' -59.2 NC_006151.1 + 72917 0.66 0.769597
Target:  5'- cUUGGCGACcGCCUCGGcGGGCgUGa- -3'
miRNA:   3'- aAGCUGCUGcCGGAGCU-CCUGgACcu -5'
29565 5' -59.2 NC_006151.1 + 106798 0.66 0.769597
Target:  5'- -gCGGCGGCGGUgCUCGucGGGGCCccgcUGGu -3'
miRNA:   3'- aaGCUGCUGCCG-GAGC--UCCUGG----ACCu -5'
29565 5' -59.2 NC_006151.1 + 132621 0.66 0.769597
Target:  5'- gUCGACGcucGCGuccGCCgUCGGcgcccGGACCUGGGc -3'
miRNA:   3'- aAGCUGC---UGC---CGG-AGCU-----CCUGGACCU- -5'
29565 5' -59.2 NC_006151.1 + 15594 0.66 0.750896
Target:  5'- -aCGACGA-GGCC--GAGGACgaGGAg -3'
miRNA:   3'- aaGCUGCUgCCGGagCUCCUGgaCCU- -5'
29565 5' -59.2 NC_006151.1 + 11030 0.66 0.750896
Target:  5'- cUCGcCGGgcCGGCCggcCGGGGgcccgGCCUGGAc -3'
miRNA:   3'- aAGCuGCU--GCCGGa--GCUCC-----UGGACCU- -5'
29565 5' -59.2 NC_006151.1 + 29591 0.66 0.74139
Target:  5'- -gCGGCGgcuGCGGCCgcggcggCGGGGGCUggugugGGAg -3'
miRNA:   3'- aaGCUGC---UGCCGGa------GCUCCUGGa-----CCU- -5'
29565 5' -59.2 NC_006151.1 + 101936 0.66 0.74139
Target:  5'- -gUGGcCGGCGaGCCagGAGGACCUGa- -3'
miRNA:   3'- aaGCU-GCUGC-CGGagCUCCUGGACcu -5'
29565 5' -59.2 NC_006151.1 + 38908 0.67 0.731792
Target:  5'- -cCGAgGugGcccgcGCCUCGuGGACCaGGAg -3'
miRNA:   3'- aaGCUgCugC-----CGGAGCuCCUGGaCCU- -5'
29565 5' -59.2 NC_006151.1 + 62510 0.67 0.731792
Target:  5'- --gGACGACGGCC-CGGcGGuACCUGc- -3'
miRNA:   3'- aagCUGCUGCCGGaGCU-CC-UGGACcu -5'
29565 5' -59.2 NC_006151.1 + 60717 0.67 0.731792
Target:  5'- -gCGACcuCGGCCcCGAGGugCcGGAg -3'
miRNA:   3'- aaGCUGcuGCCGGaGCUCCugGaCCU- -5'
29565 5' -59.2 NC_006151.1 + 78552 0.67 0.727929
Target:  5'- -cCGACGACGaagcacGCCcgggaggacgcggCGAcGGGCCUGGAg -3'
miRNA:   3'- aaGCUGCUGC------CGGa------------GCU-CCUGGACCU- -5'
29565 5' -59.2 NC_006151.1 + 127352 0.67 0.722111
Target:  5'- -aCGugGuCGGUCUCGcccugggcgGGGACCgcgGGGg -3'
miRNA:   3'- aaGCugCuGCCGGAGC---------UCCUGGa--CCU- -5'
29565 5' -59.2 NC_006151.1 + 101195 0.67 0.712355
Target:  5'- -cCGugGACGcguGCCUgcgCGAGGGCCaggcgUGGAc -3'
miRNA:   3'- aaGCugCUGC---CGGA---GCUCCUGG-----ACCU- -5'
29565 5' -59.2 NC_006151.1 + 68896 0.67 0.712355
Target:  5'- gUCGAgGACGGCCUCGcGG-UCgcgcGGGc -3'
miRNA:   3'- aAGCUgCUGCCGGAGCuCCuGGa---CCU- -5'
29565 5' -59.2 NC_006151.1 + 72060 0.67 0.70647
Target:  5'- cUCGGCGGCGcgcgccaccacccgcGCCgucagcUCGcGGGCCUGGGc -3'
miRNA:   3'- aAGCUGCUGC---------------CGG------AGCuCCUGGACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.