miRNA display CGI


Results 61 - 80 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 3' -59.9 NC_006151.1 + 93023 0.69 0.548036
Target:  5'- cCCCACcuuCUCUCUCCgucguCGCCUCccccCCGCGg -3'
miRNA:   3'- -GGGUGu--GAGAGAGG-----GCGGGGu---GGUGU- -5'
29567 3' -59.9 NC_006151.1 + 47904 0.69 0.548036
Target:  5'- cUCCGCGC-CUCgaugCGCCCCAUCGCGc -3'
miRNA:   3'- -GGGUGUGaGAGagg-GCGGGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 56607 0.69 0.538348
Target:  5'- cCCCggcgGCGCgCUCaCCgCGCCCCugCGCAc -3'
miRNA:   3'- -GGG----UGUGaGAGaGG-GCGGGGugGUGU- -5'
29567 3' -59.9 NC_006151.1 + 49579 0.69 0.557779
Target:  5'- gCCCGCGCUCg--CCggCGCCCCgGCCAg- -3'
miRNA:   3'- -GGGUGUGAGagaGG--GCGGGG-UGGUgu -5'
29567 3' -59.9 NC_006151.1 + 108158 0.69 0.557779
Target:  5'- gCCGCgggguGCUCcC-CCCGCCCCGCC-CGc -3'
miRNA:   3'- gGGUG-----UGAGaGaGGGCGGGGUGGuGU- -5'
29567 3' -59.9 NC_006151.1 + 66156 0.69 0.557779
Target:  5'- gUgGCGCUCUacaUCCCGCCgggccuguuuggCCGCCAUAa -3'
miRNA:   3'- gGgUGUGAGAg--AGGGCGG------------GGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 142650 0.69 0.590243
Target:  5'- cCCCACcgagagccgggcccaGCUCUCcCCCGggcccccCCCCcCCACAa -3'
miRNA:   3'- -GGGUG---------------UGAGAGaGGGC-------GGGGuGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 142941 0.69 0.587276
Target:  5'- aCCACACgcgCgCCCGCCCuCGCC-CAu -3'
miRNA:   3'- gGGUGUGagaGaGGGCGGG-GUGGuGU- -5'
29567 3' -59.9 NC_006151.1 + 69502 0.69 0.56757
Target:  5'- cCCCGCGCcgcCUcCUCcgCCGCCgCGCCGCGc -3'
miRNA:   3'- -GGGUGUGa--GA-GAG--GGCGGgGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 47095 0.69 0.56757
Target:  5'- cCCCGCACUCaCcUCCGCuCCUGCUGCGg -3'
miRNA:   3'- -GGGUGUGAGaGaGGGCG-GGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 99734 0.69 0.557779
Target:  5'- gCgGCGCUCgUCgacCUCGCCgCCGCCGCGg -3'
miRNA:   3'- gGgUGUGAG-AGa--GGGCGG-GGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 38999 0.7 0.500236
Target:  5'- gCCGCGCgccgCggcgC-CCCGCUCCGCCGCc -3'
miRNA:   3'- gGGUGUGa---Ga---GaGGGCGGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 60693 0.7 0.509658
Target:  5'- uCCCGCGCg----CCCGCcgcgCCCGCCGCGa -3'
miRNA:   3'- -GGGUGUGagagaGGGCG----GGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 59322 0.7 0.518201
Target:  5'- gCCCGCGCcCcCgCCCGCCCCcagcgcgcucaggGCCGCGc -3'
miRNA:   3'- -GGGUGUGaGaGaGGGCGGGG-------------UGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 9662 0.7 0.518201
Target:  5'- cCCCGCGCUUcccCUucccgcuucccccUCCGCCCgGCCGCGg -3'
miRNA:   3'- -GGGUGUGAGa--GA-------------GGGCGGGgUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 34254 0.7 0.519154
Target:  5'- uCUCGCGCcCcCUCCCGCCCgcccgaggUACCGCGg -3'
miRNA:   3'- -GGGUGUGaGaGAGGGCGGG--------GUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 51082 0.7 0.519154
Target:  5'- uCCUcCGCUCg--CCCGCCCCucuCCGCc -3'
miRNA:   3'- -GGGuGUGAGagaGGGCGGGGu--GGUGu -5'
29567 3' -59.9 NC_006151.1 + 118693 0.7 0.519154
Target:  5'- aCCCGCGCcccuUCUUcaacggCCCGCUCUGCCGCc -3'
miRNA:   3'- -GGGUGUG----AGAGa-----GGGCGGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 119509 0.7 0.528719
Target:  5'- cCCCugcuCGCUCUgcgaccgcgcCUCgCGCCCCGCCuGCGc -3'
miRNA:   3'- -GGGu---GUGAGA----------GAGgGCGGGGUGG-UGU- -5'
29567 3' -59.9 NC_006151.1 + 107520 0.7 0.500236
Target:  5'- gCCCACGCUCcCgccguuggCCCcggcgGCCCCGCCGg- -3'
miRNA:   3'- -GGGUGUGAGaGa-------GGG-----CGGGGUGGUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.