miRNA display CGI


Results 81 - 100 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 3' -59.9 NC_006151.1 + 69108 0.7 0.490892
Target:  5'- gCCGCACcagCUCCCGCCgCGCCuccGCGg -3'
miRNA:   3'- gGGUGUGagaGAGGGCGGgGUGG---UGU- -5'
29567 3' -59.9 NC_006151.1 + 107520 0.7 0.500236
Target:  5'- gCCCACGCUCcCgccguuggCCCcggcgGCCCCGCCGg- -3'
miRNA:   3'- -GGGUGUGAGaGa-------GGG-----CGGGGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 9289 0.7 0.532563
Target:  5'- uCUCGCGCUCUC-CCCGUCgCgggaaaaaaacacggCACCACAg -3'
miRNA:   3'- -GGGUGUGAGAGaGGGCGG-G---------------GUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 119509 0.7 0.528719
Target:  5'- cCCCugcuCGCUCUgcgaccgcgcCUCgCGCCCCGCCuGCGc -3'
miRNA:   3'- -GGGu---GUGAGA----------GAGgGCGGGGUGG-UGU- -5'
29567 3' -59.9 NC_006151.1 + 118693 0.7 0.519154
Target:  5'- aCCCGCGCcccuUCUUcaacggCCCGCUCUGCCGCc -3'
miRNA:   3'- -GGGUGUG----AGAGa-----GGGCGGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 51082 0.7 0.519154
Target:  5'- uCCUcCGCUCg--CCCGCCCCucuCCGCc -3'
miRNA:   3'- -GGGuGUGAGagaGGGCGGGGu--GGUGu -5'
29567 3' -59.9 NC_006151.1 + 34254 0.7 0.519154
Target:  5'- uCUCGCGCcCcCUCCCGCCCgcccgaggUACCGCGg -3'
miRNA:   3'- -GGGUGUGaGaGAGGGCGGG--------GUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 9662 0.7 0.518201
Target:  5'- cCCCGCGCUUcccCUucccgcuucccccUCCGCCCgGCCGCGg -3'
miRNA:   3'- -GGGUGUGAGa--GA-------------GGGCGGGgUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 59322 0.7 0.518201
Target:  5'- gCCCGCGCcCcCgCCCGCCCCcagcgcgcucaggGCCGCGc -3'
miRNA:   3'- -GGGUGUGaGaGaGGGCGGGG-------------UGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 60693 0.7 0.509658
Target:  5'- uCCCGCGCg----CCCGCcgcgCCCGCCGCGa -3'
miRNA:   3'- -GGGUGUGagagaGGGCG----GGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 38999 0.7 0.500236
Target:  5'- gCCGCGCgccgCggcgC-CCCGCUCCGCCGCc -3'
miRNA:   3'- gGGUGUGa---Ga---GaGGGCGGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 30480 0.71 0.436667
Target:  5'- gCCCACGCgccCUCUCCC-CCCUucGCgCACGc -3'
miRNA:   3'- -GGGUGUGa--GAGAGGGcGGGG--UG-GUGU- -5'
29567 3' -59.9 NC_006151.1 + 86070 0.71 0.436667
Target:  5'- gCCCGCAgUCUCcgcgcgcgCgCCGCCgCCGCCAUg -3'
miRNA:   3'- -GGGUGUgAGAGa-------G-GGCGG-GGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 108210 0.71 0.445469
Target:  5'- aCUACGCUCcCcaggCCCGCCgCACCGCc -3'
miRNA:   3'- gGGUGUGAGaGa---GGGCGGgGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 15946 0.71 0.445469
Target:  5'- cCCCGCGCuguUCUUUCCUcCCCCACCc-- -3'
miRNA:   3'- -GGGUGUG---AGAGAGGGcGGGGUGGugu -5'
29567 3' -59.9 NC_006151.1 + 25662 0.71 0.445469
Target:  5'- cCCCGgACUCccccggaCUCCCcCCCCACCaACAa -3'
miRNA:   3'- -GGGUgUGAGa------GAGGGcGGGGUGG-UGU- -5'
29567 3' -59.9 NC_006151.1 + 27987 0.71 0.463364
Target:  5'- gCCACGCcCaCUCCCGgCCCACCcCGa -3'
miRNA:   3'- gGGUGUGaGaGAGGGCgGGGUGGuGU- -5'
29567 3' -59.9 NC_006151.1 + 117009 0.71 0.472452
Target:  5'- aCCACGCgCUCcCCCGCgggCCCggGCCGCAg -3'
miRNA:   3'- gGGUGUGaGAGaGGGCG---GGG--UGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 9085 0.71 0.472452
Target:  5'- cCCCACACcucccuucCUC-CCCGCCCCcgacCCGCc -3'
miRNA:   3'- -GGGUGUGa-------GAGaGGGCGGGGu---GGUGu -5'
29567 3' -59.9 NC_006151.1 + 12642 0.71 0.427966
Target:  5'- cCCC-CACUC-CUCCCacaccagcCCCCGCCGCc -3'
miRNA:   3'- -GGGuGUGAGaGAGGGc-------GGGGUGGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.