miRNA display CGI


Results 101 - 120 of 129 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 3' -59.9 NC_006151.1 + 109424 0.71 0.472452
Target:  5'- gCCGCACcaccgCCgGCCCCACCACc -3'
miRNA:   3'- gGGUGUGagagaGGgCGGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 109207 0.72 0.386054
Target:  5'- gCCgGC-CUCgccagagaCUCCCGCCCCGgCGCAg -3'
miRNA:   3'- -GGgUGuGAGa-------GAGGGCGGGGUgGUGU- -5'
29567 3' -59.9 NC_006151.1 + 37147 0.72 0.393396
Target:  5'- gCCCGCGCcgggccgccaccgUCUCcgCCgGCgCCCGCCGCGg -3'
miRNA:   3'- -GGGUGUG-------------AGAGa-GGgCG-GGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 40278 0.72 0.394218
Target:  5'- aCUCugACUCugacUCUCCgGCCCCuCCACc -3'
miRNA:   3'- -GGGugUGAG----AGAGGgCGGGGuGGUGu -5'
29567 3' -59.9 NC_006151.1 + 62693 0.72 0.394218
Target:  5'- gCCC-CugUCcCuuguccccggUCCCGCCCCGCCGCc -3'
miRNA:   3'- -GGGuGugAGaG----------AGGGCGGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 14794 0.72 0.394218
Target:  5'- cCCCcCGCUCgaccgCCCGCCCCcgacccACCGCGu -3'
miRNA:   3'- -GGGuGUGAGaga--GGGCGGGG------UGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 50823 0.72 0.410877
Target:  5'- gUCCACGC-CUCggCCCGCgCCGCCGu- -3'
miRNA:   3'- -GGGUGUGaGAGa-GGGCGgGGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 91794 0.72 0.410877
Target:  5'- gCCCggcuuauauGCGCgggaugC-CCCGCCCCGCCACAu -3'
miRNA:   3'- -GGG---------UGUGaga---GaGGGCGGGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 117899 0.72 0.419369
Target:  5'- cUCCGC-CUCUCUCUUcaCCCCGCCGCc -3'
miRNA:   3'- -GGGUGuGAGAGAGGGc-GGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 109594 0.72 0.419369
Target:  5'- gCCCGCGCUCUUcacCCCGCcgccgucggaCCCGCCGg- -3'
miRNA:   3'- -GGGUGUGAGAGa--GGGCG----------GGGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 12084 0.73 0.332111
Target:  5'- cCCCgAC-CUCUCUcaCCCGCCCUcCCGCGc -3'
miRNA:   3'- -GGG-UGuGAGAGA--GGGCGGGGuGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 60654 0.73 0.332111
Target:  5'- gCCCGCGCcgCguccucgCUCCCGUCgCCGCCGCc -3'
miRNA:   3'- -GGGUGUGa-Ga------GAGGGCGG-GGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 108323 0.73 0.339468
Target:  5'- cCCCGCGCcCgggCCCGCCCCAUCGg- -3'
miRNA:   3'- -GGGUGUGaGagaGGGCGGGGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 49327 0.73 0.346942
Target:  5'- gCCCACGCUCaaaaggcCUgcgcgccggaCCCGCgCCGCCACAa -3'
miRNA:   3'- -GGGUGUGAGa------GA----------GGGCGgGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 142754 0.73 0.354533
Target:  5'- gCCCA-GCUCUCcCCCggGCCCCcCCACAa -3'
miRNA:   3'- -GGGUgUGAGAGaGGG--CGGGGuGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 108264 0.73 0.370064
Target:  5'- aCUACGCUCcCcaggCCCGCCCCuCCACc -3'
miRNA:   3'- gGGUGUGAGaGa---GGGCGGGGuGGUGu -5'
29567 3' -59.9 NC_006151.1 + 10129 0.73 0.370064
Target:  5'- cCCCuCGCUCUCUcucccCCCGUCCCccucuCCGCGu -3'
miRNA:   3'- -GGGuGUGAGAGA-----GGGCGGGGu----GGUGU- -5'
29567 3' -59.9 NC_006151.1 + 11299 0.73 0.370064
Target:  5'- cCCCGCcCgCUCUCCCGggCCGCCGCGa -3'
miRNA:   3'- -GGGUGuGaGAGAGGGCggGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 62798 0.74 0.324873
Target:  5'- cCCCACgGCUCUCUuccCCCGUCCUcgGCCAUc -3'
miRNA:   3'- -GGGUG-UGAGAGA---GGGCGGGG--UGGUGu -5'
29567 3' -59.9 NC_006151.1 + 109876 0.74 0.317752
Target:  5'- aCgGCGCUCguccCUCCCGCCCauccucCGCCGCGg -3'
miRNA:   3'- gGgUGUGAGa---GAGGGCGGG------GUGGUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.