Results 121 - 129 of 129 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 29567 | 3' | -59.9 | NC_006151.1 | + | 109876 | 0.74 | 0.317752 |
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Target: 5'- aCgGCGCUCguccCUCCCGCCCauccucCGCCGCGg -3' miRNA: 3'- gGgUGUGAGa---GAGGGCGGG------GUGGUGU- -5' |
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| 29567 | 3' | -59.9 | NC_006151.1 | + | 62798 | 0.74 | 0.324873 |
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Target: 5'- cCCCACgGCUCUCUuccCCCGUCCUcgGCCAUc -3' miRNA: 3'- -GGGUG-UGAGAGA---GGGCGGGG--UGGUGu -5' |
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| 29567 | 3' | -59.9 | NC_006151.1 | + | 61416 | 0.74 | 0.324873 |
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Target: 5'- cCCCGCcgUC-CUCCUcgGCCCCGCCGCGg -3' miRNA: 3'- -GGGUGugAGaGAGGG--CGGGGUGGUGU- -5' |
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| 29567 | 3' | -59.9 | NC_006151.1 | + | 101869 | 0.75 | 0.2775 |
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Target: 5'- -gCGCAC-CgCUCCCGCCgCCGCCGCGg -3' miRNA: 3'- ggGUGUGaGaGAGGGCGG-GGUGGUGU- -5' |
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| 29567 | 3' | -59.9 | NC_006151.1 | + | 32758 | 0.76 | 0.230294 |
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Target: 5'- cCCCACACgccccgCUCUCCCacGCCgCgGCCGCGg -3' miRNA: 3'- -GGGUGUGa-----GAGAGGG--CGG-GgUGGUGU- -5' |
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| 29567 | 3' | -59.9 | NC_006151.1 | + | 33706 | 0.77 | 0.209338 |
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Target: 5'- aCgCACGCUCUCUCUCGCacaCCCcCCACAu -3' miRNA: 3'- -GgGUGUGAGAGAGGGCG---GGGuGGUGU- -5' |
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| 29567 | 3' | -59.9 | NC_006151.1 | + | 117969 | 0.77 | 0.204362 |
|
Target: 5'- gCCGCGCcuucUCUCUCCCGCUCCcgucucgucucGCCGCGu -3' miRNA: 3'- gGGUGUG----AGAGAGGGCGGGG-----------UGGUGU- -5' |
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| 29567 | 3' | -59.9 | NC_006151.1 | + | 12957 | 0.77 | 0.190047 |
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Target: 5'- gCCCACACUCacUUUCUCGCuCCCACCcCAc -3' miRNA: 3'- -GGGUGUGAG--AGAGGGCG-GGGUGGuGU- -5' |
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| 29567 | 3' | -59.9 | NC_006151.1 | + | 109367 | 0.79 | 0.160034 |
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Target: 5'- gCCAcCAC-CUCUUCCGCCCCcGCCGCAc -3' miRNA: 3'- gGGU-GUGaGAGAGGGCGGGG-UGGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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