miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 3' -59.9 NC_006151.1 + 38999 0.7 0.500236
Target:  5'- gCCGCGCgccgCggcgC-CCCGCUCCGCCGCc -3'
miRNA:   3'- gGGUGUGa---Ga---GaGGGCGGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 60693 0.7 0.509658
Target:  5'- uCCCGCGCg----CCCGCcgcgCCCGCCGCGa -3'
miRNA:   3'- -GGGUGUGagagaGGGCG----GGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 51082 0.7 0.519154
Target:  5'- uCCUcCGCUCg--CCCGCCCCucuCCGCc -3'
miRNA:   3'- -GGGuGUGAGagaGGGCGGGGu--GGUGu -5'
29567 3' -59.9 NC_006151.1 + 9289 0.7 0.532563
Target:  5'- uCUCGCGCUCUC-CCCGUCgCgggaaaaaaacacggCACCACAg -3'
miRNA:   3'- -GGGUGUGAGAGaGGGCGG-G---------------GUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 107520 0.7 0.500236
Target:  5'- gCCCACGCUCcCgccguuggCCCcggcgGCCCCGCCGg- -3'
miRNA:   3'- -GGGUGUGAGaGa-------GGG-----CGGGGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 59322 0.7 0.518201
Target:  5'- gCCCGCGCcCcCgCCCGCCCCcagcgcgcucaggGCCGCGc -3'
miRNA:   3'- -GGGUGUGaGaGaGGGCGGGG-------------UGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 9662 0.7 0.518201
Target:  5'- cCCCGCGCUUcccCUucccgcuucccccUCCGCCCgGCCGCGg -3'
miRNA:   3'- -GGGUGUGAGa--GA-------------GGGCGGGgUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 12871 0.7 0.490892
Target:  5'- uCCCGCcucucCUCUCcucuccccccaUCCCGCCCCGCUc-- -3'
miRNA:   3'- -GGGUGu----GAGAG-----------AGGGCGGGGUGGugu -5'
29567 3' -59.9 NC_006151.1 + 119509 0.7 0.528719
Target:  5'- cCCCugcuCGCUCUgcgaccgcgcCUCgCGCCCCGCCuGCGc -3'
miRNA:   3'- -GGGu---GUGAGA----------GAGgGCGGGGUGG-UGU- -5'
29567 3' -59.9 NC_006151.1 + 7874 0.7 0.481629
Target:  5'- cCCCACcccucuaucuCUCUCUCCCGguccCCCCucCCACc -3'
miRNA:   3'- -GGGUGu---------GAGAGAGGGC----GGGGu-GGUGu -5'
29567 3' -59.9 NC_006151.1 + 888 0.7 0.481629
Target:  5'- uCCCAcCGC-CUUUCCCuCCCCuCCACGa -3'
miRNA:   3'- -GGGU-GUGaGAGAGGGcGGGGuGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 47011 0.7 0.481629
Target:  5'- uCCCGCuccuGCUCcugCUCCCgGCCCCACUc-- -3'
miRNA:   3'- -GGGUG----UGAGa--GAGGG-CGGGGUGGugu -5'
29567 3' -59.9 NC_006151.1 + 32200 0.7 0.485324
Target:  5'- uCCCGgACUCgggagccgCUCCCGCuCCCccguuuuuccuccugGCCGCGg -3'
miRNA:   3'- -GGGUgUGAGa-------GAGGGCG-GGG---------------UGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 139878 0.7 0.489962
Target:  5'- gCgGCACgacCUCUCCCGCCCCguguucaACgACGg -3'
miRNA:   3'- gGgUGUGa--GAGAGGGCGGGG-------UGgUGU- -5'
29567 3' -59.9 NC_006151.1 + 47945 0.7 0.490892
Target:  5'- gCCACGCUCcaguugC-CCCGCCCCcCgGCAc -3'
miRNA:   3'- gGGUGUGAGa-----GaGGGCGGGGuGgUGU- -5'
29567 3' -59.9 NC_006151.1 + 9154 0.7 0.490892
Target:  5'- gCCCAgACcuucCUCUCCCcCCuCCACCGCc -3'
miRNA:   3'- -GGGUgUGa---GAGAGGGcGG-GGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 34254 0.7 0.519154
Target:  5'- uCUCGCGCcCcCUCCCGCCCgcccgaggUACCGCGg -3'
miRNA:   3'- -GGGUGUGaGaGAGGGCGGG--------GUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 118693 0.7 0.519154
Target:  5'- aCCCGCGCcccuUCUUcaacggCCCGCUCUGCCGCc -3'
miRNA:   3'- -GGGUGUG----AGAGa-----GGGCGGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 142650 0.69 0.590243
Target:  5'- cCCCACcgagagccgggcccaGCUCUCcCCCGggcccccCCCCcCCACAa -3'
miRNA:   3'- -GGGUG---------------UGAGAGaGGGC-------GGGGuGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 142941 0.69 0.587276
Target:  5'- aCCACACgcgCgCCCGCCCuCGCC-CAu -3'
miRNA:   3'- gGGUGUGagaGaGGGCGGG-GUGGuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.