miRNA display CGI


Results 81 - 100 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 3' -59.9 NC_006151.1 + 71446 0.68 0.635965
Target:  5'- aCCCGCcccccCUC-CUCCCucgcuccGCCUCGCCACc -3'
miRNA:   3'- -GGGUGu----GAGaGAGGG-------CGGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 11367 0.68 0.594204
Target:  5'- aCCgCGCGCUCcgCUCgCCGCCucuuccccccuccuCCGCCGCc -3'
miRNA:   3'- -GG-GUGUGAGa-GAG-GGCGG--------------GGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 28141 0.68 0.597177
Target:  5'- cUCCGCGC-CUCUCCCGgucgauCCCCGuCgGCGu -3'
miRNA:   3'- -GGGUGUGaGAGAGGGC------GGGGU-GgUGU- -5'
29567 3' -59.9 NC_006151.1 + 31598 0.68 0.597177
Target:  5'- cUCCGCGCUC-C-CCCGCCgCCugggcggggauGCCGCGc -3'
miRNA:   3'- -GGGUGUGAGaGaGGGCGG-GG-----------UGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 67687 0.68 0.607104
Target:  5'- gCUCGCGCgcagCUCCCGCUuguCCGCCugGc -3'
miRNA:   3'- -GGGUGUGaga-GAGGGCGG---GGUGGugU- -5'
29567 3' -59.9 NC_006151.1 + 10602 0.68 0.617048
Target:  5'- cUCCGCcCUC-CUCCCuCCCCGCgCGCc -3'
miRNA:   3'- -GGGUGuGAGaGAGGGcGGGGUG-GUGu -5'
29567 3' -59.9 NC_006151.1 + 123361 0.68 0.617048
Target:  5'- gCCGCGCUCcUUCCgGCCgUCACgCGCAa -3'
miRNA:   3'- gGGUGUGAGaGAGGgCGG-GGUG-GUGU- -5'
29567 3' -59.9 NC_006151.1 + 77200 0.68 0.617048
Target:  5'- gCCGCGucCUCcaUC-CCCGCgCCGCCGCGu -3'
miRNA:   3'- gGGUGU--GAG--AGaGGGCGgGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 107574 0.68 0.627002
Target:  5'- gCCCGCggaGCUgaCUCCCgccgccaagcugGCCCCGCCGg- -3'
miRNA:   3'- -GGGUG---UGAgaGAGGG------------CGGGGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 50676 0.67 0.706139
Target:  5'- gCCGCACc----CCCGCgCCGCCGCGg -3'
miRNA:   3'- gGGUGUGagagaGGGCGgGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 88716 0.67 0.696368
Target:  5'- gCCCuCGgUCUCggcgUCCGCCgCgGCCACGc -3'
miRNA:   3'- -GGGuGUgAGAGa---GGGCGG-GgUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 109502 0.67 0.696368
Target:  5'- uUCACAC-CUC-CgCCGCUgCCGCCGCAg -3'
miRNA:   3'- gGGUGUGaGAGaG-GGCGG-GGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 126193 0.67 0.686547
Target:  5'- aCCgGCACa-UCUCgCGCCUgCGCCGCAa -3'
miRNA:   3'- -GGgUGUGagAGAGgGCGGG-GUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 44868 0.67 0.686547
Target:  5'- --gGCGCcCUCUCUCGCCCgACCuCGg -3'
miRNA:   3'- gggUGUGaGAGAGGGCGGGgUGGuGU- -5'
29567 3' -59.9 NC_006151.1 + 33735 0.67 0.686547
Target:  5'- aUCACACUCUC-CCCGCgCaCAgaCACAc -3'
miRNA:   3'- gGGUGUGAGAGaGGGCGgG-GUg-GUGU- -5'
29567 3' -59.9 NC_006151.1 + 38018 0.67 0.686547
Target:  5'- gCCCugccCGCUCcggCUgCCCGCgCCCGcCCGCGc -3'
miRNA:   3'- -GGGu---GUGAGa--GA-GGGCG-GGGU-GGUGU- -5'
29567 3' -59.9 NC_006151.1 + 29906 0.67 0.676683
Target:  5'- uCCCGCuCgcgCUC-CCCGCCCCuCCu-- -3'
miRNA:   3'- -GGGUGuGa--GAGaGGGCGGGGuGGugu -5'
29567 3' -59.9 NC_006151.1 + 130545 0.67 0.656859
Target:  5'- cCCCGCGCgagggcggCgcgCUgCCGCCCCACgAg- -3'
miRNA:   3'- -GGGUGUGa-------Ga--GAgGGCGGGGUGgUgu -5'
29567 3' -59.9 NC_006151.1 + 15333 0.67 0.656859
Target:  5'- aCCCGCGCgucCUCUCCCcGCCggUCAUCGa- -3'
miRNA:   3'- -GGGUGUGa--GAGAGGG-CGG--GGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 38094 0.67 0.656859
Target:  5'- gCCGCGCUg-CUCgCGCUCCGCgACGc -3'
miRNA:   3'- gGGUGUGAgaGAGgGCGGGGUGgUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.