miRNA display CGI


Results 101 - 120 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 3' -59.9 NC_006151.1 + 38094 0.67 0.656859
Target:  5'- gCCGCGCUg-CUCgCGCUCCGCgACGc -3'
miRNA:   3'- gGGUGUGAgaGAGgGCGGGGUGgUGU- -5'
29567 3' -59.9 NC_006151.1 + 126193 0.67 0.686547
Target:  5'- aCCgGCACa-UCUCgCGCCUgCGCCGCAa -3'
miRNA:   3'- -GGgUGUGagAGAGgGCGGG-GUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 130545 0.67 0.656859
Target:  5'- cCCCGCGCgagggcggCgcgCUgCCGCCCCACgAg- -3'
miRNA:   3'- -GGGUGUGa-------Ga--GAgGGCGGGGUGgUgu -5'
29567 3' -59.9 NC_006151.1 + 36989 0.67 0.663809
Target:  5'- cCCCGgccCGCUCgccCUccgccccccgggccCCCGCCgCCGCCGCGc -3'
miRNA:   3'- -GGGU---GUGAGa--GA--------------GGGCGG-GGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 15255 0.67 0.666785
Target:  5'- cCCUGCuccaGCUCUCgCCCgagcagagcGCCCCGCUGCGc -3'
miRNA:   3'- -GGGUG----UGAGAGaGGG---------CGGGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 35864 0.67 0.666785
Target:  5'- cUCCGCGCUCggcgCCCgGCCUCGCUcagGCAg -3'
miRNA:   3'- -GGGUGUGAGaga-GGG-CGGGGUGG---UGU- -5'
29567 3' -59.9 NC_006151.1 + 89922 0.67 0.666785
Target:  5'- cUCCACGCUgUagCCgCGCCCCAgguCCGCGg -3'
miRNA:   3'- -GGGUGUGAgAgaGG-GCGGGGU---GGUGU- -5'
29567 3' -59.9 NC_006151.1 + 7074 0.66 0.744543
Target:  5'- uCCCGCGCgcCUCUgauuugcaugCCCGgCCCGCUcuGCGg -3'
miRNA:   3'- -GGGUGUGa-GAGA----------GGGCgGGGUGG--UGU- -5'
29567 3' -59.9 NC_006151.1 + 13470 0.66 0.753932
Target:  5'- uCCCGCGggC-CggaCCGCCCCGCCGa- -3'
miRNA:   3'- -GGGUGUgaGaGag-GGCGGGGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 65901 0.66 0.75766
Target:  5'- gUCCGC-CUcCUCcCCCucguccucgucgggcGCCCCGCCGCc -3'
miRNA:   3'- -GGGUGuGA-GAGaGGG---------------CGGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 31808 0.66 0.76322
Target:  5'- gCCGCGuccuccucCUC-CUCCCuCCCCGCCGg- -3'
miRNA:   3'- gGGUGU--------GAGaGAGGGcGGGGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 7654 0.66 0.76322
Target:  5'- cCUCGCGCUCggcgcgcgCUCCgagggCGCCCCAgCCGg- -3'
miRNA:   3'- -GGGUGUGAGa-------GAGG-----GCGGGGU-GGUgu -5'
29567 3' -59.9 NC_006151.1 + 48773 0.66 0.744543
Target:  5'- gCCgACGC-CUCcgcCCCGCCCC-CCGa- -3'
miRNA:   3'- -GGgUGUGaGAGa--GGGCGGGGuGGUgu -5'
29567 3' -59.9 NC_006151.1 + 17762 0.66 0.743599
Target:  5'- gCCCACaaccacguggcucGCUCUCcuccgCCCGCUUCGCCc-- -3'
miRNA:   3'- -GGGUG-------------UGAGAGa----GGGCGGGGUGGugu -5'
29567 3' -59.9 NC_006151.1 + 141839 0.66 0.73506
Target:  5'- uCCCGCGCUCgacgcgaggggCUCgCGCCgCGCCc-- -3'
miRNA:   3'- -GGGUGUGAGa----------GAGgGCGGgGUGGugu -5'
29567 3' -59.9 NC_006151.1 + 68635 0.66 0.73506
Target:  5'- gCCCGCGCgUCg--CCgGCUCCACUGCc -3'
miRNA:   3'- -GGGUGUG-AGagaGGgCGGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 68416 0.66 0.73506
Target:  5'- gCCCGCcC-C-C-CUCGCCCCGCUACAc -3'
miRNA:   3'- -GGGUGuGaGaGaGGGCGGGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 33976 0.66 0.725493
Target:  5'- gCCCgcgcggggACACUCUUUCCCccggaggggcGUCCCGgCGCGc -3'
miRNA:   3'- -GGG--------UGUGAGAGAGGG----------CGGGGUgGUGU- -5'
29567 3' -59.9 NC_006151.1 + 132903 0.66 0.722608
Target:  5'- aCCaCGCACUC-CUCgucgcgcauccucaCCGaCCCCcCCACAa -3'
miRNA:   3'- -GG-GUGUGAGaGAG--------------GGC-GGGGuGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 39635 0.66 0.71585
Target:  5'- aCCCGCGC-CgggCcccggaccccggUCCCGCUgCCGCCGCGc -3'
miRNA:   3'- -GGGUGUGaGa--G------------AGGGCGG-GGUGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.