miRNA display CGI


Results 61 - 80 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 3' -59.9 NC_006151.1 + 93023 0.69 0.548036
Target:  5'- cCCCACcuuCUCUCUCCgucguCGCCUCccccCCGCGg -3'
miRNA:   3'- -GGGUGu--GAGAGAGG-----GCGGGGu---GGUGU- -5'
29567 3' -59.9 NC_006151.1 + 12814 0.69 0.556802
Target:  5'- cUCCGCGucccCUCUC-CCCGCCgCCccccgcgGCCACAc -3'
miRNA:   3'- -GGGUGU----GAGAGaGGGCGG-GG-------UGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 11437 0.69 0.557779
Target:  5'- gCCCACgcaACUC-CUCCCGCCCgCgugcccccgggGCCAUc -3'
miRNA:   3'- -GGGUG---UGAGaGAGGGCGGG-G-----------UGGUGu -5'
29567 3' -59.9 NC_006151.1 + 49579 0.69 0.557779
Target:  5'- gCCCGCGCUCg--CCggCGCCCCgGCCAg- -3'
miRNA:   3'- -GGGUGUGAGagaGG--GCGGGG-UGGUgu -5'
29567 3' -59.9 NC_006151.1 + 108158 0.69 0.557779
Target:  5'- gCCGCgggguGCUCcC-CCCGCCCCGCC-CGc -3'
miRNA:   3'- gGGUG-----UGAGaGaGGGCGGGGUGGuGU- -5'
29567 3' -59.9 NC_006151.1 + 99734 0.69 0.557779
Target:  5'- gCgGCGCUCgUCgacCUCGCCgCCGCCGCGg -3'
miRNA:   3'- gGgUGUGAG-AGa--GGGCGG-GGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 66156 0.69 0.557779
Target:  5'- gUgGCGCUCUacaUCCCGCCgggccuguuuggCCGCCAUAa -3'
miRNA:   3'- gGgUGUGAGAg--AGGGCGG------------GGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 47095 0.69 0.56757
Target:  5'- cCCCGCACUCaCcUCCGCuCCUGCUGCGg -3'
miRNA:   3'- -GGGUGUGAGaGaGGGCG-GGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 69502 0.69 0.56757
Target:  5'- cCCCGCGCcgcCUcCUCcgCCGCCgCGCCGCGc -3'
miRNA:   3'- -GGGUGUGa--GA-GAG--GGCGGgGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 142941 0.69 0.587276
Target:  5'- aCCACACgcgCgCCCGCCCuCGCC-CAu -3'
miRNA:   3'- gGGUGUGagaGaGGGCGGG-GUGGuGU- -5'
29567 3' -59.9 NC_006151.1 + 142650 0.69 0.590243
Target:  5'- cCCCACcgagagccgggcccaGCUCUCcCCCGggcccccCCCCcCCACAa -3'
miRNA:   3'- -GGGUG---------------UGAGAGaGGGC-------GGGGuGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 11367 0.68 0.594204
Target:  5'- aCCgCGCGCUCcgCUCgCCGCCucuuccccccuccuCCGCCGCc -3'
miRNA:   3'- -GG-GUGUGAGa-GAG-GGCGG--------------GGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 28141 0.68 0.597177
Target:  5'- cUCCGCGC-CUCUCCCGgucgauCCCCGuCgGCGu -3'
miRNA:   3'- -GGGUGUGaGAGAGGGC------GGGGU-GgUGU- -5'
29567 3' -59.9 NC_006151.1 + 31598 0.68 0.597177
Target:  5'- cUCCGCGCUC-C-CCCGCCgCCugggcggggauGCCGCGc -3'
miRNA:   3'- -GGGUGUGAGaGaGGGCGG-GG-----------UGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 67687 0.68 0.607104
Target:  5'- gCUCGCGCgcagCUCCCGCUuguCCGCCugGc -3'
miRNA:   3'- -GGGUGUGaga-GAGGGCGG---GGUGGugU- -5'
29567 3' -59.9 NC_006151.1 + 123361 0.68 0.617048
Target:  5'- gCCGCGCUCcUUCCgGCCgUCACgCGCAa -3'
miRNA:   3'- gGGUGUGAGaGAGGgCGG-GGUG-GUGU- -5'
29567 3' -59.9 NC_006151.1 + 77200 0.68 0.617048
Target:  5'- gCCGCGucCUCcaUC-CCCGCgCCGCCGCGu -3'
miRNA:   3'- gGGUGU--GAG--AGaGGGCGgGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 10602 0.68 0.617048
Target:  5'- cUCCGCcCUC-CUCCCuCCCCGCgCGCc -3'
miRNA:   3'- -GGGUGuGAGaGAGGGcGGGGUG-GUGu -5'
29567 3' -59.9 NC_006151.1 + 34110 0.68 0.627002
Target:  5'- cCCCGCcC-CUUUgcaCCCGCCCCcCCACc -3'
miRNA:   3'- -GGGUGuGaGAGA---GGGCGGGGuGGUGu -5'
29567 3' -59.9 NC_006151.1 + 107574 0.68 0.627002
Target:  5'- gCCCGCggaGCUgaCUCCCgccgccaagcugGCCCCGCCGg- -3'
miRNA:   3'- -GGGUG---UGAgaGAGGG------------CGGGGUGGUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.