miRNA display CGI


Results 81 - 100 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 3' -59.9 NC_006151.1 + 71446 0.68 0.635965
Target:  5'- aCCCGCcccccCUC-CUCCCucgcuccGCCUCGCCACc -3'
miRNA:   3'- -GGGUGu----GAGaGAGGG-------CGGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 30539 0.68 0.636961
Target:  5'- cCCCGCucccccCUCUCgUUCCGCgCCGCaCGCGc -3'
miRNA:   3'- -GGGUGu-----GAGAG-AGGGCGgGGUG-GUGU- -5'
29567 3' -59.9 NC_006151.1 + 8293 0.68 0.636961
Target:  5'- cCCCGCGCgggCgccgCgUCCCGCCCCgaGCCc-- -3'
miRNA:   3'- -GGGUGUGa--Ga---G-AGGGCGGGG--UGGugu -5'
29567 3' -59.9 NC_006151.1 + 112225 0.68 0.636961
Target:  5'- gUCGCGCUCgCUCgUCGCCgCCGCCAg- -3'
miRNA:   3'- gGGUGUGAGaGAG-GGCGG-GGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 109820 0.68 0.636961
Target:  5'- cCCCGCGCUC---CCCGCuggcggaccCCCACCAg- -3'
miRNA:   3'- -GGGUGUGAGagaGGGCG---------GGGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 85682 0.68 0.646916
Target:  5'- aCCUGCGCUUcCUgCUGgCCCACUACGu -3'
miRNA:   3'- -GGGUGUGAGaGAgGGCgGGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 72031 0.68 0.646916
Target:  5'- cCCCGCGCggg----CGCCCCGCCGCGc -3'
miRNA:   3'- -GGGUGUGagagaggGCGGGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 56808 0.68 0.646916
Target:  5'- cCCCucuCUCgCUCCC-CCCCgACCGCGg -3'
miRNA:   3'- -GGGuguGAGaGAGGGcGGGG-UGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 32621 0.68 0.646916
Target:  5'- gCCGCGC-CUCUCCCuCCCgcuuccccccuCGCCGCc -3'
miRNA:   3'- gGGUGUGaGAGAGGGcGGG-----------GUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 15333 0.67 0.656859
Target:  5'- aCCCGCGCgucCUCUCCCcGCCggUCAUCGa- -3'
miRNA:   3'- -GGGUGUGa--GAGAGGG-CGG--GGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 130545 0.67 0.656859
Target:  5'- cCCCGCGCgagggcggCgcgCUgCCGCCCCACgAg- -3'
miRNA:   3'- -GGGUGUGa-------Ga--GAgGGCGGGGUGgUgu -5'
29567 3' -59.9 NC_006151.1 + 38094 0.67 0.656859
Target:  5'- gCCGCGCUg-CUCgCGCUCCGCgACGc -3'
miRNA:   3'- gGGUGUGAgaGAGgGCGGGGUGgUGU- -5'
29567 3' -59.9 NC_006151.1 + 36989 0.67 0.663809
Target:  5'- cCCCGgccCGCUCgccCUccgccccccgggccCCCGCCgCCGCCGCGc -3'
miRNA:   3'- -GGGU---GUGAGa--GA--------------GGGCGG-GGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 131622 0.67 0.666785
Target:  5'- gCCCGCGg-CUUUauaCGCCCCACCcACAg -3'
miRNA:   3'- -GGGUGUgaGAGAgg-GCGGGGUGG-UGU- -5'
29567 3' -59.9 NC_006151.1 + 89922 0.67 0.666785
Target:  5'- cUCCACGCUgUagCCgCGCCCCAgguCCGCGg -3'
miRNA:   3'- -GGGUGUGAgAgaGG-GCGGGGU---GGUGU- -5'
29567 3' -59.9 NC_006151.1 + 67975 0.67 0.666785
Target:  5'- aCCACGCagUCgcggcggCCCGCCggCGCCGCGg -3'
miRNA:   3'- gGGUGUGagAGa------GGGCGGg-GUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 15255 0.67 0.666785
Target:  5'- cCCUGCuccaGCUCUCgCCCgagcagagcGCCCCGCUGCGc -3'
miRNA:   3'- -GGGUG----UGAGAGaGGG---------CGGGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 35864 0.67 0.666785
Target:  5'- cUCCGCGCUCggcgCCCgGCCUCGCUcagGCAg -3'
miRNA:   3'- -GGGUGUGAGaga-GGG-CGGGGUGG---UGU- -5'
29567 3' -59.9 NC_006151.1 + 29906 0.67 0.676683
Target:  5'- uCCCGCuCgcgCUC-CCCGCCCCuCCu-- -3'
miRNA:   3'- -GGGUGuGa--GAGaGGGCGGGGuGGugu -5'
29567 3' -59.9 NC_006151.1 + 38018 0.67 0.686547
Target:  5'- gCCCugccCGCUCcggCUgCCCGCgCCCGcCCGCGc -3'
miRNA:   3'- -GGGu---GUGAGa--GA-GGGCG-GGGU-GGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.