Results 101 - 120 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29567 | 3' | -59.9 | NC_006151.1 | + | 44868 | 0.67 | 0.686547 |
Target: 5'- --gGCGCcCUCUCUCGCCCgACCuCGg -3' miRNA: 3'- gggUGUGaGAGAGGGCGGGgUGGuGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 33735 | 0.67 | 0.686547 |
Target: 5'- aUCACACUCUC-CCCGCgCaCAgaCACAc -3' miRNA: 3'- gGGUGUGAGAGaGGGCGgG-GUg-GUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 38018 | 0.67 | 0.686547 |
Target: 5'- gCCCugccCGCUCcggCUgCCCGCgCCCGcCCGCGc -3' miRNA: 3'- -GGGu---GUGAGa--GA-GGGCG-GGGU-GGUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 109502 | 0.67 | 0.696368 |
Target: 5'- uUCACAC-CUC-CgCCGCUgCCGCCGCAg -3' miRNA: 3'- gGGUGUGaGAGaG-GGCGG-GGUGGUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 88716 | 0.67 | 0.696368 |
Target: 5'- gCCCuCGgUCUCggcgUCCGCCgCgGCCACGc -3' miRNA: 3'- -GGGuGUgAGAGa---GGGCGG-GgUGGUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 50676 | 0.67 | 0.706139 |
Target: 5'- gCCGCACc----CCCGCgCCGCCGCGg -3' miRNA: 3'- gGGUGUGagagaGGGCGgGGUGGUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 66747 | 0.67 | 0.706139 |
Target: 5'- gCgGCGCUC-CUUCCGCgaCGCCGCGa -3' miRNA: 3'- gGgUGUGAGaGAGGGCGggGUGGUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 39635 | 0.66 | 0.71585 |
Target: 5'- aCCCGCGC-CgggCcccggaccccggUCCCGCUgCCGCCGCGc -3' miRNA: 3'- -GGGUGUGaGa--G------------AGGGCGG-GGUGGUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 132903 | 0.66 | 0.722608 |
Target: 5'- aCCaCGCACUC-CUCgucgcgcauccucaCCGaCCCCcCCACAa -3' miRNA: 3'- -GG-GUGUGAGaGAG--------------GGC-GGGGuGGUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 33976 | 0.66 | 0.725493 |
Target: 5'- gCCCgcgcggggACACUCUUUCCCccggaggggcGUCCCGgCGCGc -3' miRNA: 3'- -GGG--------UGUGAGAGAGGG----------CGGGGUgGUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 87684 | 0.66 | 0.725493 |
Target: 5'- gCCC-CGCUCccuUCccgCCCGCCCCgacgACCAa- -3' miRNA: 3'- -GGGuGUGAG---AGa--GGGCGGGG----UGGUgu -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 48589 | 0.66 | 0.73506 |
Target: 5'- gCCCgggguGCGC-CUCgucgugCCUGCCgCCGCCGCc -3' miRNA: 3'- -GGG-----UGUGaGAGa-----GGGCGG-GGUGGUGu -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 141839 | 0.66 | 0.73506 |
Target: 5'- uCCCGCGCUCgacgcgaggggCUCgCGCCgCGCCc-- -3' miRNA: 3'- -GGGUGUGAGa----------GAGgGCGGgGUGGugu -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 68635 | 0.66 | 0.73506 |
Target: 5'- gCCCGCGCgUCg--CCgGCUCCACUGCc -3' miRNA: 3'- -GGGUGUG-AGagaGGgCGGGGUGGUGu -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 68416 | 0.66 | 0.73506 |
Target: 5'- gCCCGCcC-C-C-CUCGCCCCGCUACAc -3' miRNA: 3'- -GGGUGuGaGaGaGGGCGGGGUGGUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 35778 | 0.66 | 0.73506 |
Target: 5'- aCCCAC-CgaggCUCUCGgCCCGCCAgAg -3' miRNA: 3'- -GGGUGuGaga-GAGGGCgGGGUGGUgU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 33765 | 0.66 | 0.73506 |
Target: 5'- aCgACACcCUCcccgCCCGCCCCGuCCGa- -3' miRNA: 3'- gGgUGUGaGAGa---GGGCGGGGU-GGUgu -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 17762 | 0.66 | 0.743599 |
Target: 5'- gCCCACaaccacguggcucGCUCUCcuccgCCCGCUUCGCCc-- -3' miRNA: 3'- -GGGUG-------------UGAGAGa----GGGCGGGGUGGugu -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 48773 | 0.66 | 0.744543 |
Target: 5'- gCCgACGC-CUCcgcCCCGCCCC-CCGa- -3' miRNA: 3'- -GGgUGUGaGAGa--GGGCGGGGuGGUgu -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 7074 | 0.66 | 0.744543 |
Target: 5'- uCCCGCGCgcCUCUgauuugcaugCCCGgCCCGCUcuGCGg -3' miRNA: 3'- -GGGUGUGa-GAGA----------GGGCgGGGUGG--UGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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