Results 121 - 129 of 129 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 29567 | 3' | -59.9 | NC_006151.1 | + | 13470 | 0.66 | 0.753932 |
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Target: 5'- uCCCGCGggC-CggaCCGCCCCGCCGa- -3' miRNA: 3'- -GGGUGUgaGaGag-GGCGGGGUGGUgu -5' |
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| 29567 | 3' | -59.9 | NC_006151.1 | + | 80351 | 0.66 | 0.753932 |
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Target: 5'- --gGCgGCUCUCcgCCCGUCUCACaCACAa -3' miRNA: 3'- gggUG-UGAGAGa-GGGCGGGGUG-GUGU- -5' |
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| 29567 | 3' | -59.9 | NC_006151.1 | + | 49130 | 0.66 | 0.753932 |
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Target: 5'- aCCCgACGCUg---CCCGCgCCCGcCCACGg -3' miRNA: 3'- -GGG-UGUGAgagaGGGCG-GGGU-GGUGU- -5' |
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| 29567 | 3' | -59.9 | NC_006151.1 | + | 65901 | 0.66 | 0.75766 |
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Target: 5'- gUCCGC-CUcCUCcCCCucguccucgucgggcGCCCCGCCGCc -3' miRNA: 3'- -GGGUGuGA-GAGaGGG---------------CGGGGUGGUGu -5' |
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| 29567 | 3' | -59.9 | NC_006151.1 | + | 31808 | 0.66 | 0.76322 |
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Target: 5'- gCCGCGuccuccucCUC-CUCCCuCCCCGCCGg- -3' miRNA: 3'- gGGUGU--------GAGaGAGGGcGGGGUGGUgu -5' |
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| 29567 | 3' | -59.9 | NC_006151.1 | + | 130325 | 0.66 | 0.76322 |
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Target: 5'- gCCgCGCGCUCggggagCUCgCGCgCCGCgGCGu -3' miRNA: 3'- -GG-GUGUGAGa-----GAGgGCGgGGUGgUGU- -5' |
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| 29567 | 3' | -59.9 | NC_006151.1 | + | 7654 | 0.66 | 0.76322 |
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Target: 5'- cCUCGCGCUCggcgcgcgCUCCgagggCGCCCCAgCCGg- -3' miRNA: 3'- -GGGUGUGAGa-------GAGG-----GCGGGGU-GGUgu -5' |
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| 29567 | 3' | -59.9 | NC_006151.1 | + | 9022 | 0.66 | 0.76322 |
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Target: 5'- cCCCGgACcCcCUCCCG-CCCGCCGgGg -3' miRNA: 3'- -GGGUgUGaGaGAGGGCgGGGUGGUgU- -5' |
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| 29567 | 3' | -59.9 | NC_006151.1 | + | 93704 | 0.66 | 0.76322 |
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Target: 5'- aCUCGCACUCgaUCUCcaCCGCCUCGgCAa- -3' miRNA: 3'- -GGGUGUGAG--AGAG--GGCGGGGUgGUgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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