miRNA display CGI


Results 61 - 80 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 3' -59.9 NC_006151.1 + 48773 0.66 0.744543
Target:  5'- gCCgACGC-CUCcgcCCCGCCCC-CCGa- -3'
miRNA:   3'- -GGgUGUGaGAGa--GGGCGGGGuGGUgu -5'
29567 3' -59.9 NC_006151.1 + 49130 0.66 0.753932
Target:  5'- aCCCgACGCUg---CCCGCgCCCGcCCACGg -3'
miRNA:   3'- -GGG-UGUGAgagaGGGCG-GGGU-GGUGU- -5'
29567 3' -59.9 NC_006151.1 + 49327 0.73 0.346942
Target:  5'- gCCCACGCUCaaaaggcCUgcgcgccggaCCCGCgCCGCCACAa -3'
miRNA:   3'- -GGGUGUGAGa------GA----------GGGCGgGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 49579 0.69 0.557779
Target:  5'- gCCCGCGCUCg--CCggCGCCCCgGCCAg- -3'
miRNA:   3'- -GGGUGUGAGagaGG--GCGGGG-UGGUgu -5'
29567 3' -59.9 NC_006151.1 + 50676 0.67 0.706139
Target:  5'- gCCGCACc----CCCGCgCCGCCGCGg -3'
miRNA:   3'- gGGUGUGagagaGGGCGgGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 50823 0.72 0.410877
Target:  5'- gUCCACGC-CUCggCCCGCgCCGCCGu- -3'
miRNA:   3'- -GGGUGUGaGAGa-GGGCGgGGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 51082 0.7 0.519154
Target:  5'- uCCUcCGCUCg--CCCGCCCCucuCCGCc -3'
miRNA:   3'- -GGGuGUGAGagaGGGCGGGGu--GGUGu -5'
29567 3' -59.9 NC_006151.1 + 56607 0.69 0.538348
Target:  5'- cCCCggcgGCGCgCUCaCCgCGCCCCugCGCAc -3'
miRNA:   3'- -GGG----UGUGaGAGaGG-GCGGGGugGUGU- -5'
29567 3' -59.9 NC_006151.1 + 56808 0.68 0.646916
Target:  5'- cCCCucuCUCgCUCCC-CCCCgACCGCGg -3'
miRNA:   3'- -GGGuguGAGaGAGGGcGGGG-UGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 59322 0.7 0.518201
Target:  5'- gCCCGCGCcCcCgCCCGCCCCcagcgcgcucaggGCCGCGc -3'
miRNA:   3'- -GGGUGUGaGaGaGGGCGGGG-------------UGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 60654 0.73 0.332111
Target:  5'- gCCCGCGCcgCguccucgCUCCCGUCgCCGCCGCc -3'
miRNA:   3'- -GGGUGUGa-Ga------GAGGGCGG-GGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 60693 0.7 0.509658
Target:  5'- uCCCGCGCg----CCCGCcgcgCCCGCCGCGa -3'
miRNA:   3'- -GGGUGUGagagaGGGCG----GGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 61416 0.74 0.324873
Target:  5'- cCCCGCcgUC-CUCCUcgGCCCCGCCGCGg -3'
miRNA:   3'- -GGGUGugAGaGAGGG--CGGGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 62693 0.72 0.394218
Target:  5'- gCCC-CugUCcCuuguccccggUCCCGCCCCGCCGCc -3'
miRNA:   3'- -GGGuGugAGaG----------AGGGCGGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 62798 0.74 0.324873
Target:  5'- cCCCACgGCUCUCUuccCCCGUCCUcgGCCAUc -3'
miRNA:   3'- -GGGUG-UGAGAGA---GGGCGGGG--UGGUGu -5'
29567 3' -59.9 NC_006151.1 + 65901 0.66 0.75766
Target:  5'- gUCCGC-CUcCUCcCCCucguccucgucgggcGCCCCGCCGCc -3'
miRNA:   3'- -GGGUGuGA-GAGaGGG---------------CGGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 66156 0.69 0.557779
Target:  5'- gUgGCGCUCUacaUCCCGCCgggccuguuuggCCGCCAUAa -3'
miRNA:   3'- gGgUGUGAGAg--AGGGCGG------------GGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 66747 0.67 0.706139
Target:  5'- gCgGCGCUC-CUUCCGCgaCGCCGCGa -3'
miRNA:   3'- gGgUGUGAGaGAGGGCGggGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 67687 0.68 0.607104
Target:  5'- gCUCGCGCgcagCUCCCGCUuguCCGCCugGc -3'
miRNA:   3'- -GGGUGUGaga-GAGGGCGG---GGUGGugU- -5'
29567 3' -59.9 NC_006151.1 + 67975 0.67 0.666785
Target:  5'- aCCACGCagUCgcggcggCCCGCCggCGCCGCGg -3'
miRNA:   3'- gGGUGUGagAGa------GGGCGGg-GUGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.