miRNA display CGI


Results 81 - 100 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 3' -59.9 NC_006151.1 + 68416 0.66 0.73506
Target:  5'- gCCCGCcC-C-C-CUCGCCCCGCUACAc -3'
miRNA:   3'- -GGGUGuGaGaGaGGGCGGGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 68635 0.66 0.73506
Target:  5'- gCCCGCGCgUCg--CCgGCUCCACUGCc -3'
miRNA:   3'- -GGGUGUG-AGagaGGgCGGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 69108 0.7 0.490892
Target:  5'- gCCGCACcagCUCCCGCCgCGCCuccGCGg -3'
miRNA:   3'- gGGUGUGagaGAGGGCGGgGUGG---UGU- -5'
29567 3' -59.9 NC_006151.1 + 69502 0.69 0.56757
Target:  5'- cCCCGCGCcgcCUcCUCcgCCGCCgCGCCGCGc -3'
miRNA:   3'- -GGGUGUGa--GA-GAG--GGCGGgGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 71446 0.68 0.635965
Target:  5'- aCCCGCcccccCUC-CUCCCucgcuccGCCUCGCCACc -3'
miRNA:   3'- -GGGUGu----GAGaGAGGG-------CGGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 72031 0.68 0.646916
Target:  5'- cCCCGCGCggg----CGCCCCGCCGCGc -3'
miRNA:   3'- -GGGUGUGagagaggGCGGGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 77200 0.68 0.617048
Target:  5'- gCCGCGucCUCcaUC-CCCGCgCCGCCGCGu -3'
miRNA:   3'- gGGUGU--GAG--AGaGGGCGgGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 80351 0.66 0.753932
Target:  5'- --gGCgGCUCUCcgCCCGUCUCACaCACAa -3'
miRNA:   3'- gggUG-UGAGAGa-GGGCGGGGUG-GUGU- -5'
29567 3' -59.9 NC_006151.1 + 85682 0.68 0.646916
Target:  5'- aCCUGCGCUUcCUgCUGgCCCACUACGu -3'
miRNA:   3'- -GGGUGUGAGaGAgGGCgGGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 86070 0.71 0.436667
Target:  5'- gCCCGCAgUCUCcgcgcgcgCgCCGCCgCCGCCAUg -3'
miRNA:   3'- -GGGUGUgAGAGa-------G-GGCGG-GGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 87684 0.66 0.725493
Target:  5'- gCCC-CGCUCccuUCccgCCCGCCCCgacgACCAa- -3'
miRNA:   3'- -GGGuGUGAG---AGa--GGGCGGGG----UGGUgu -5'
29567 3' -59.9 NC_006151.1 + 88716 0.67 0.696368
Target:  5'- gCCCuCGgUCUCggcgUCCGCCgCgGCCACGc -3'
miRNA:   3'- -GGGuGUgAGAGa---GGGCGG-GgUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 89922 0.67 0.666785
Target:  5'- cUCCACGCUgUagCCgCGCCCCAgguCCGCGg -3'
miRNA:   3'- -GGGUGUGAgAgaGG-GCGGGGU---GGUGU- -5'
29567 3' -59.9 NC_006151.1 + 91794 0.72 0.410877
Target:  5'- gCCCggcuuauauGCGCgggaugC-CCCGCCCCGCCACAu -3'
miRNA:   3'- -GGG---------UGUGaga---GaGGGCGGGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 93023 0.69 0.548036
Target:  5'- cCCCACcuuCUCUCUCCgucguCGCCUCccccCCGCGg -3'
miRNA:   3'- -GGGUGu--GAGAGAGG-----GCGGGGu---GGUGU- -5'
29567 3' -59.9 NC_006151.1 + 93321 0.74 0.310749
Target:  5'- cCCCAuccCACUCUCccauccccguUCCCGUCCCACCc-- -3'
miRNA:   3'- -GGGU---GUGAGAG----------AGGGCGGGGUGGugu -5'
29567 3' -59.9 NC_006151.1 + 93704 0.66 0.76322
Target:  5'- aCUCGCACUCgaUCUCcaCCGCCUCGgCAa- -3'
miRNA:   3'- -GGGUGUGAG--AGAG--GGCGGGGUgGUgu -5'
29567 3' -59.9 NC_006151.1 + 99734 0.69 0.557779
Target:  5'- gCgGCGCUCgUCgacCUCGCCgCCGCCGCGg -3'
miRNA:   3'- gGgUGUGAG-AGa--GGGCGG-GGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 101869 0.75 0.2775
Target:  5'- -gCGCAC-CgCUCCCGCCgCCGCCGCGg -3'
miRNA:   3'- ggGUGUGaGaGAGGGCGG-GGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 107520 0.7 0.500236
Target:  5'- gCCCACGCUCcCgccguuggCCCcggcgGCCCCGCCGg- -3'
miRNA:   3'- -GGGUGUGAGaGa-------GGG-----CGGGGUGGUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.