miRNA display CGI


Results 101 - 120 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 3' -59.9 NC_006151.1 + 107574 0.68 0.627002
Target:  5'- gCCCGCggaGCUgaCUCCCgccgccaagcugGCCCCGCCGg- -3'
miRNA:   3'- -GGGUG---UGAgaGAGGG------------CGGGGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 108158 0.69 0.557779
Target:  5'- gCCGCgggguGCUCcC-CCCGCCCCGCC-CGc -3'
miRNA:   3'- gGGUG-----UGAGaGaGGGCGGGGUGGuGU- -5'
29567 3' -59.9 NC_006151.1 + 108210 0.71 0.445469
Target:  5'- aCUACGCUCcCcaggCCCGCCgCACCGCc -3'
miRNA:   3'- gGGUGUGAGaGa---GGGCGGgGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 108264 0.73 0.370064
Target:  5'- aCUACGCUCcCcaggCCCGCCCCuCCACc -3'
miRNA:   3'- gGGUGUGAGaGa---GGGCGGGGuGGUGu -5'
29567 3' -59.9 NC_006151.1 + 108323 0.73 0.339468
Target:  5'- cCCCGCGCcCgggCCCGCCCCAUCGg- -3'
miRNA:   3'- -GGGUGUGaGagaGGGCGGGGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 109207 0.72 0.386054
Target:  5'- gCCgGC-CUCgccagagaCUCCCGCCCCGgCGCAg -3'
miRNA:   3'- -GGgUGuGAGa-------GAGGGCGGGGUgGUGU- -5'
29567 3' -59.9 NC_006151.1 + 109367 0.79 0.160034
Target:  5'- gCCAcCAC-CUCUUCCGCCCCcGCCGCAc -3'
miRNA:   3'- gGGU-GUGaGAGAGGGCGGGG-UGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 109424 0.71 0.472452
Target:  5'- gCCGCACcaccgCCgGCCCCACCACc -3'
miRNA:   3'- gGGUGUGagagaGGgCGGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 109502 0.67 0.696368
Target:  5'- uUCACAC-CUC-CgCCGCUgCCGCCGCAg -3'
miRNA:   3'- gGGUGUGaGAGaG-GGCGG-GGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 109594 0.72 0.419369
Target:  5'- gCCCGCGCUCUUcacCCCGCcgccgucggaCCCGCCGg- -3'
miRNA:   3'- -GGGUGUGAGAGa--GGGCG----------GGGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 109820 0.68 0.636961
Target:  5'- cCCCGCGCUC---CCCGCuggcggaccCCCACCAg- -3'
miRNA:   3'- -GGGUGUGAGagaGGGCG---------GGGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 109876 0.74 0.317752
Target:  5'- aCgGCGCUCguccCUCCCGCCCauccucCGCCGCGg -3'
miRNA:   3'- gGgUGUGAGa---GAGGGCGGG------GUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 112225 0.68 0.636961
Target:  5'- gUCGCGCUCgCUCgUCGCCgCCGCCAg- -3'
miRNA:   3'- gGGUGUGAGaGAG-GGCGG-GGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 117009 0.71 0.472452
Target:  5'- aCCACGCgCUCcCCCGCgggCCCggGCCGCAg -3'
miRNA:   3'- gGGUGUGaGAGaGGGCG---GGG--UGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 117899 0.72 0.419369
Target:  5'- cUCCGC-CUCUCUCUUcaCCCCGCCGCc -3'
miRNA:   3'- -GGGUGuGAGAGAGGGc-GGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 117969 0.77 0.204362
Target:  5'- gCCGCGCcuucUCUCUCCCGCUCCcgucucgucucGCCGCGu -3'
miRNA:   3'- gGGUGUG----AGAGAGGGCGGGG-----------UGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 118693 0.7 0.519154
Target:  5'- aCCCGCGCcccuUCUUcaacggCCCGCUCUGCCGCc -3'
miRNA:   3'- -GGGUGUG----AGAGa-----GGGCGGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 119509 0.7 0.528719
Target:  5'- cCCCugcuCGCUCUgcgaccgcgcCUCgCGCCCCGCCuGCGc -3'
miRNA:   3'- -GGGu---GUGAGA----------GAGgGCGGGGUGG-UGU- -5'
29567 3' -59.9 NC_006151.1 + 123361 0.68 0.617048
Target:  5'- gCCGCGCUCcUUCCgGCCgUCACgCGCAa -3'
miRNA:   3'- gGGUGUGAGaGAGGgCGG-GGUG-GUGU- -5'
29567 3' -59.9 NC_006151.1 + 126193 0.67 0.686547
Target:  5'- aCCgGCACa-UCUCgCGCCUgCGCCGCAa -3'
miRNA:   3'- -GGgUGUGagAGAGgGCGGG-GUGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.