Results 121 - 129 of 129 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 29567 | 3' | -59.9 | NC_006151.1 | + | 130325 | 0.66 | 0.76322 |
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Target: 5'- gCCgCGCGCUCggggagCUCgCGCgCCGCgGCGu -3' miRNA: 3'- -GG-GUGUGAGa-----GAGgGCGgGGUGgUGU- -5' |
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| 29567 | 3' | -59.9 | NC_006151.1 | + | 130545 | 0.67 | 0.656859 |
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Target: 5'- cCCCGCGCgagggcggCgcgCUgCCGCCCCACgAg- -3' miRNA: 3'- -GGGUGUGa-------Ga--GAgGGCGGGGUGgUgu -5' |
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| 29567 | 3' | -59.9 | NC_006151.1 | + | 131622 | 0.67 | 0.666785 |
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Target: 5'- gCCCGCGg-CUUUauaCGCCCCACCcACAg -3' miRNA: 3'- -GGGUGUgaGAGAgg-GCGGGGUGG-UGU- -5' |
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| 29567 | 3' | -59.9 | NC_006151.1 | + | 132903 | 0.66 | 0.722608 |
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Target: 5'- aCCaCGCACUC-CUCgucgcgcauccucaCCGaCCCCcCCACAa -3' miRNA: 3'- -GG-GUGUGAGaGAG--------------GGC-GGGGuGGUGU- -5' |
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| 29567 | 3' | -59.9 | NC_006151.1 | + | 139878 | 0.7 | 0.489962 |
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Target: 5'- gCgGCACgacCUCUCCCGCCCCguguucaACgACGg -3' miRNA: 3'- gGgUGUGa--GAGAGGGCGGGG-------UGgUGU- -5' |
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| 29567 | 3' | -59.9 | NC_006151.1 | + | 141839 | 0.66 | 0.73506 |
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Target: 5'- uCCCGCGCUCgacgcgaggggCUCgCGCCgCGCCc-- -3' miRNA: 3'- -GGGUGUGAGa----------GAGgGCGGgGUGGugu -5' |
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| 29567 | 3' | -59.9 | NC_006151.1 | + | 142650 | 0.69 | 0.590243 |
|
Target: 5'- cCCCACcgagagccgggcccaGCUCUCcCCCGggcccccCCCCcCCACAa -3' miRNA: 3'- -GGGUG---------------UGAGAGaGGGC-------GGGGuGGUGU- -5' |
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| 29567 | 3' | -59.9 | NC_006151.1 | + | 142754 | 0.73 | 0.354533 |
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Target: 5'- gCCCA-GCUCUCcCCCggGCCCCcCCACAa -3' miRNA: 3'- -GGGUgUGAGAGaGGG--CGGGGuGGUGU- -5' |
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| 29567 | 3' | -59.9 | NC_006151.1 | + | 142941 | 0.69 | 0.587276 |
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Target: 5'- aCCACACgcgCgCCCGCCCuCGCC-CAu -3' miRNA: 3'- gGGUGUGagaGaGGGCGGG-GUGGuGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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