Results 41 - 60 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29567 | 3' | -59.9 | NC_006151.1 | + | 85682 | 0.68 | 0.646916 |
Target: 5'- aCCUGCGCUUcCUgCUGgCCCACUACGu -3' miRNA: 3'- -GGGUGUGAGaGAgGGCgGGGUGGUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 80351 | 0.66 | 0.753932 |
Target: 5'- --gGCgGCUCUCcgCCCGUCUCACaCACAa -3' miRNA: 3'- gggUG-UGAGAGa-GGGCGGGGUG-GUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 77200 | 0.68 | 0.617048 |
Target: 5'- gCCGCGucCUCcaUC-CCCGCgCCGCCGCGu -3' miRNA: 3'- gGGUGU--GAG--AGaGGGCGgGGUGGUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 72031 | 0.68 | 0.646916 |
Target: 5'- cCCCGCGCggg----CGCCCCGCCGCGc -3' miRNA: 3'- -GGGUGUGagagaggGCGGGGUGGUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 71446 | 0.68 | 0.635965 |
Target: 5'- aCCCGCcccccCUC-CUCCCucgcuccGCCUCGCCACc -3' miRNA: 3'- -GGGUGu----GAGaGAGGG-------CGGGGUGGUGu -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 69502 | 0.69 | 0.56757 |
Target: 5'- cCCCGCGCcgcCUcCUCcgCCGCCgCGCCGCGc -3' miRNA: 3'- -GGGUGUGa--GA-GAG--GGCGGgGUGGUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 69108 | 0.7 | 0.490892 |
Target: 5'- gCCGCACcagCUCCCGCCgCGCCuccGCGg -3' miRNA: 3'- gGGUGUGagaGAGGGCGGgGUGG---UGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 68635 | 0.66 | 0.73506 |
Target: 5'- gCCCGCGCgUCg--CCgGCUCCACUGCc -3' miRNA: 3'- -GGGUGUG-AGagaGGgCGGGGUGGUGu -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 68416 | 0.66 | 0.73506 |
Target: 5'- gCCCGCcC-C-C-CUCGCCCCGCUACAc -3' miRNA: 3'- -GGGUGuGaGaGaGGGCGGGGUGGUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 67975 | 0.67 | 0.666785 |
Target: 5'- aCCACGCagUCgcggcggCCCGCCggCGCCGCGg -3' miRNA: 3'- gGGUGUGagAGa------GGGCGGg-GUGGUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 67687 | 0.68 | 0.607104 |
Target: 5'- gCUCGCGCgcagCUCCCGCUuguCCGCCugGc -3' miRNA: 3'- -GGGUGUGaga-GAGGGCGG---GGUGGugU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 66747 | 0.67 | 0.706139 |
Target: 5'- gCgGCGCUC-CUUCCGCgaCGCCGCGa -3' miRNA: 3'- gGgUGUGAGaGAGGGCGggGUGGUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 66156 | 0.69 | 0.557779 |
Target: 5'- gUgGCGCUCUacaUCCCGCCgggccuguuuggCCGCCAUAa -3' miRNA: 3'- gGgUGUGAGAg--AGGGCGG------------GGUGGUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 65901 | 0.66 | 0.75766 |
Target: 5'- gUCCGC-CUcCUCcCCCucguccucgucgggcGCCCCGCCGCc -3' miRNA: 3'- -GGGUGuGA-GAGaGGG---------------CGGGGUGGUGu -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 62798 | 0.74 | 0.324873 |
Target: 5'- cCCCACgGCUCUCUuccCCCGUCCUcgGCCAUc -3' miRNA: 3'- -GGGUG-UGAGAGA---GGGCGGGG--UGGUGu -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 62693 | 0.72 | 0.394218 |
Target: 5'- gCCC-CugUCcCuuguccccggUCCCGCCCCGCCGCc -3' miRNA: 3'- -GGGuGugAGaG----------AGGGCGGGGUGGUGu -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 61416 | 0.74 | 0.324873 |
Target: 5'- cCCCGCcgUC-CUCCUcgGCCCCGCCGCGg -3' miRNA: 3'- -GGGUGugAGaGAGGG--CGGGGUGGUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 60693 | 0.7 | 0.509658 |
Target: 5'- uCCCGCGCg----CCCGCcgcgCCCGCCGCGa -3' miRNA: 3'- -GGGUGUGagagaGGGCG----GGGUGGUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 60654 | 0.73 | 0.332111 |
Target: 5'- gCCCGCGCcgCguccucgCUCCCGUCgCCGCCGCc -3' miRNA: 3'- -GGGUGUGa-Ga------GAGGGCGG-GGUGGUGu -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 59322 | 0.7 | 0.518201 |
Target: 5'- gCCCGCGCcCcCgCCCGCCCCcagcgcgcucaggGCCGCGc -3' miRNA: 3'- -GGGUGUGaGaGaGGGCGGGG-------------UGGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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