miRNA display CGI


Results 61 - 80 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 3' -59.9 NC_006151.1 + 56808 0.68 0.646916
Target:  5'- cCCCucuCUCgCUCCC-CCCCgACCGCGg -3'
miRNA:   3'- -GGGuguGAGaGAGGGcGGGG-UGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 56607 0.69 0.538348
Target:  5'- cCCCggcgGCGCgCUCaCCgCGCCCCugCGCAc -3'
miRNA:   3'- -GGG----UGUGaGAGaGG-GCGGGGugGUGU- -5'
29567 3' -59.9 NC_006151.1 + 51082 0.7 0.519154
Target:  5'- uCCUcCGCUCg--CCCGCCCCucuCCGCc -3'
miRNA:   3'- -GGGuGUGAGagaGGGCGGGGu--GGUGu -5'
29567 3' -59.9 NC_006151.1 + 50823 0.72 0.410877
Target:  5'- gUCCACGC-CUCggCCCGCgCCGCCGu- -3'
miRNA:   3'- -GGGUGUGaGAGa-GGGCGgGGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 50676 0.67 0.706139
Target:  5'- gCCGCACc----CCCGCgCCGCCGCGg -3'
miRNA:   3'- gGGUGUGagagaGGGCGgGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 49579 0.69 0.557779
Target:  5'- gCCCGCGCUCg--CCggCGCCCCgGCCAg- -3'
miRNA:   3'- -GGGUGUGAGagaGG--GCGGGG-UGGUgu -5'
29567 3' -59.9 NC_006151.1 + 49327 0.73 0.346942
Target:  5'- gCCCACGCUCaaaaggcCUgcgcgccggaCCCGCgCCGCCACAa -3'
miRNA:   3'- -GGGUGUGAGa------GA----------GGGCGgGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 49130 0.66 0.753932
Target:  5'- aCCCgACGCUg---CCCGCgCCCGcCCACGg -3'
miRNA:   3'- -GGG-UGUGAgagaGGGCG-GGGU-GGUGU- -5'
29567 3' -59.9 NC_006151.1 + 48773 0.66 0.744543
Target:  5'- gCCgACGC-CUCcgcCCCGCCCC-CCGa- -3'
miRNA:   3'- -GGgUGUGaGAGa--GGGCGGGGuGGUgu -5'
29567 3' -59.9 NC_006151.1 + 48589 0.66 0.73506
Target:  5'- gCCCgggguGCGC-CUCgucgugCCUGCCgCCGCCGCc -3'
miRNA:   3'- -GGG-----UGUGaGAGa-----GGGCGG-GGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 47945 0.7 0.490892
Target:  5'- gCCACGCUCcaguugC-CCCGCCCCcCgGCAc -3'
miRNA:   3'- gGGUGUGAGa-----GaGGGCGGGGuGgUGU- -5'
29567 3' -59.9 NC_006151.1 + 47904 0.69 0.548036
Target:  5'- cUCCGCGC-CUCgaugCGCCCCAUCGCGc -3'
miRNA:   3'- -GGGUGUGaGAGagg-GCGGGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 47095 0.69 0.56757
Target:  5'- cCCCGCACUCaCcUCCGCuCCUGCUGCGg -3'
miRNA:   3'- -GGGUGUGAGaGaGGGCG-GGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 47011 0.7 0.481629
Target:  5'- uCCCGCuccuGCUCcugCUCCCgGCCCCACUc-- -3'
miRNA:   3'- -GGGUG----UGAGa--GAGGG-CGGGGUGGugu -5'
29567 3' -59.9 NC_006151.1 + 44868 0.67 0.686547
Target:  5'- --gGCGCcCUCUCUCGCCCgACCuCGg -3'
miRNA:   3'- gggUGUGaGAGAGGGCGGGgUGGuGU- -5'
29567 3' -59.9 NC_006151.1 + 40278 0.72 0.394218
Target:  5'- aCUCugACUCugacUCUCCgGCCCCuCCACc -3'
miRNA:   3'- -GGGugUGAG----AGAGGgCGGGGuGGUGu -5'
29567 3' -59.9 NC_006151.1 + 39635 0.66 0.71585
Target:  5'- aCCCGCGC-CgggCcccggaccccggUCCCGCUgCCGCCGCGc -3'
miRNA:   3'- -GGGUGUGaGa--G------------AGGGCGG-GGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 38999 0.7 0.500236
Target:  5'- gCCGCGCgccgCggcgC-CCCGCUCCGCCGCc -3'
miRNA:   3'- gGGUGUGa---Ga---GaGGGCGGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 38094 0.67 0.656859
Target:  5'- gCCGCGCUg-CUCgCGCUCCGCgACGc -3'
miRNA:   3'- gGGUGUGAgaGAGgGCGGGGUGgUGU- -5'
29567 3' -59.9 NC_006151.1 + 38018 0.67 0.686547
Target:  5'- gCCCugccCGCUCcggCUgCCCGCgCCCGcCCGCGc -3'
miRNA:   3'- -GGGu---GUGAGa--GA-GGGCG-GGGU-GGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.