Results 81 - 100 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29567 | 3' | -59.9 | NC_006151.1 | + | 37147 | 0.72 | 0.393396 |
Target: 5'- gCCCGCGCcgggccgccaccgUCUCcgCCgGCgCCCGCCGCGg -3' miRNA: 3'- -GGGUGUG-------------AGAGa-GGgCG-GGGUGGUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 36989 | 0.67 | 0.663809 |
Target: 5'- cCCCGgccCGCUCgccCUccgccccccgggccCCCGCCgCCGCCGCGc -3' miRNA: 3'- -GGGU---GUGAGa--GA--------------GGGCGG-GGUGGUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 35864 | 0.67 | 0.666785 |
Target: 5'- cUCCGCGCUCggcgCCCgGCCUCGCUcagGCAg -3' miRNA: 3'- -GGGUGUGAGaga-GGG-CGGGGUGG---UGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 35778 | 0.66 | 0.73506 |
Target: 5'- aCCCAC-CgaggCUCUCGgCCCGCCAgAg -3' miRNA: 3'- -GGGUGuGaga-GAGGGCgGGGUGGUgU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 34254 | 0.7 | 0.519154 |
Target: 5'- uCUCGCGCcCcCUCCCGCCCgcccgaggUACCGCGg -3' miRNA: 3'- -GGGUGUGaGaGAGGGCGGG--------GUGGUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 34146 | 0.74 | 0.317752 |
Target: 5'- gUCCGCGCUCcgaccccccccCUCCCccucugccacGCCCCGCCACGc -3' miRNA: 3'- -GGGUGUGAGa----------GAGGG----------CGGGGUGGUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 34110 | 0.68 | 0.627002 |
Target: 5'- cCCCGCcC-CUUUgcaCCCGCCCCcCCACc -3' miRNA: 3'- -GGGUGuGaGAGA---GGGCGGGGuGGUGu -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 33976 | 0.66 | 0.725493 |
Target: 5'- gCCCgcgcggggACACUCUUUCCCccggaggggcGUCCCGgCGCGc -3' miRNA: 3'- -GGG--------UGUGAGAGAGGG----------CGGGGUgGUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 33765 | 0.66 | 0.73506 |
Target: 5'- aCgACACcCUCcccgCCCGCCCCGuCCGa- -3' miRNA: 3'- gGgUGUGaGAGa---GGGCGGGGU-GGUgu -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 33735 | 0.67 | 0.686547 |
Target: 5'- aUCACACUCUC-CCCGCgCaCAgaCACAc -3' miRNA: 3'- gGGUGUGAGAGaGGGCGgG-GUg-GUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 33706 | 0.77 | 0.209338 |
Target: 5'- aCgCACGCUCUCUCUCGCacaCCCcCCACAu -3' miRNA: 3'- -GgGUGUGAGAGAGGGCG---GGGuGGUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 32758 | 0.76 | 0.230294 |
Target: 5'- cCCCACACgccccgCUCUCCCacGCCgCgGCCGCGg -3' miRNA: 3'- -GGGUGUGa-----GAGAGGG--CGG-GgUGGUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 32621 | 0.68 | 0.646916 |
Target: 5'- gCCGCGC-CUCUCCCuCCCgcuuccccccuCGCCGCc -3' miRNA: 3'- gGGUGUGaGAGAGGGcGGG-----------GUGGUGu -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 32200 | 0.7 | 0.485324 |
Target: 5'- uCCCGgACUCgggagccgCUCCCGCuCCCccguuuuuccuccugGCCGCGg -3' miRNA: 3'- -GGGUgUGAGa-------GAGGGCG-GGG---------------UGGUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 31808 | 0.66 | 0.76322 |
Target: 5'- gCCGCGuccuccucCUC-CUCCCuCCCCGCCGg- -3' miRNA: 3'- gGGUGU--------GAGaGAGGGcGGGGUGGUgu -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 31598 | 0.68 | 0.597177 |
Target: 5'- cUCCGCGCUC-C-CCCGCCgCCugggcggggauGCCGCGc -3' miRNA: 3'- -GGGUGUGAGaGaGGGCGG-GG-----------UGGUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 30539 | 0.68 | 0.636961 |
Target: 5'- cCCCGCucccccCUCUCgUUCCGCgCCGCaCGCGc -3' miRNA: 3'- -GGGUGu-----GAGAG-AGGGCGgGGUG-GUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 30480 | 0.71 | 0.436667 |
Target: 5'- gCCCACGCgccCUCUCCC-CCCUucGCgCACGc -3' miRNA: 3'- -GGGUGUGa--GAGAGGGcGGGG--UG-GUGU- -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 29906 | 0.67 | 0.676683 |
Target: 5'- uCCCGCuCgcgCUC-CCCGCCCCuCCu-- -3' miRNA: 3'- -GGGUGuGa--GAGaGGGCGGGGuGGugu -5' |
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29567 | 3' | -59.9 | NC_006151.1 | + | 28141 | 0.68 | 0.597177 |
Target: 5'- cUCCGCGC-CUCUCCCGgucgauCCCCGuCgGCGu -3' miRNA: 3'- -GGGUGUGaGAGAGGGC------GGGGU-GgUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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