miRNA display CGI


Results 101 - 120 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 3' -59.9 NC_006151.1 + 27987 0.71 0.463364
Target:  5'- gCCACGCcCaCUCCCGgCCCACCcCGa -3'
miRNA:   3'- gGGUGUGaGaGAGGGCgGGGUGGuGU- -5'
29567 3' -59.9 NC_006151.1 + 25662 0.71 0.445469
Target:  5'- cCCCGgACUCccccggaCUCCCcCCCCACCaACAa -3'
miRNA:   3'- -GGGUgUGAGa------GAGGGcGGGGUGG-UGU- -5'
29567 3' -59.9 NC_006151.1 + 17762 0.66 0.743599
Target:  5'- gCCCACaaccacguggcucGCUCUCcuccgCCCGCUUCGCCc-- -3'
miRNA:   3'- -GGGUG-------------UGAGAGa----GGGCGGGGUGGugu -5'
29567 3' -59.9 NC_006151.1 + 15946 0.71 0.445469
Target:  5'- cCCCGCGCuguUCUUUCCUcCCCCACCc-- -3'
miRNA:   3'- -GGGUGUG---AGAGAGGGcGGGGUGGugu -5'
29567 3' -59.9 NC_006151.1 + 15333 0.67 0.656859
Target:  5'- aCCCGCGCgucCUCUCCCcGCCggUCAUCGa- -3'
miRNA:   3'- -GGGUGUGa--GAGAGGG-CGG--GGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 15255 0.67 0.666785
Target:  5'- cCCUGCuccaGCUCUCgCCCgagcagagcGCCCCGCUGCGc -3'
miRNA:   3'- -GGGUG----UGAGAGaGGG---------CGGGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 14794 0.72 0.394218
Target:  5'- cCCCcCGCUCgaccgCCCGCCCCcgacccACCGCGu -3'
miRNA:   3'- -GGGuGUGAGaga--GGGCGGGG------UGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 13470 0.66 0.753932
Target:  5'- uCCCGCGggC-CggaCCGCCCCGCCGa- -3'
miRNA:   3'- -GGGUGUgaGaGag-GGCGGGGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 12957 0.77 0.190047
Target:  5'- gCCCACACUCacUUUCUCGCuCCCACCcCAc -3'
miRNA:   3'- -GGGUGUGAG--AGAGGGCG-GGGUGGuGU- -5'
29567 3' -59.9 NC_006151.1 + 12871 0.7 0.490892
Target:  5'- uCCCGCcucucCUCUCcucuccccccaUCCCGCCCCGCUc-- -3'
miRNA:   3'- -GGGUGu----GAGAG-----------AGGGCGGGGUGGugu -5'
29567 3' -59.9 NC_006151.1 + 12814 0.69 0.556802
Target:  5'- cUCCGCGucccCUCUC-CCCGCCgCCccccgcgGCCACAc -3'
miRNA:   3'- -GGGUGU----GAGAGaGGGCGG-GG-------UGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 12642 0.71 0.427966
Target:  5'- cCCC-CACUC-CUCCCacaccagcCCCCGCCGCc -3'
miRNA:   3'- -GGGuGUGAGaGAGGGc-------GGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 12084 0.73 0.332111
Target:  5'- cCCCgAC-CUCUCUcaCCCGCCCUcCCGCGc -3'
miRNA:   3'- -GGG-UGuGAGAGA--GGGCGGGGuGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 11437 0.69 0.557779
Target:  5'- gCCCACgcaACUC-CUCCCGCCCgCgugcccccgggGCCAUc -3'
miRNA:   3'- -GGGUG---UGAGaGAGGGCGGG-G-----------UGGUGu -5'
29567 3' -59.9 NC_006151.1 + 11367 0.68 0.594204
Target:  5'- aCCgCGCGCUCcgCUCgCCGCCucuuccccccuccuCCGCCGCc -3'
miRNA:   3'- -GG-GUGUGAGa-GAG-GGCGG--------------GGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 11299 0.73 0.370064
Target:  5'- cCCCGCcCgCUCUCCCGggCCGCCGCGa -3'
miRNA:   3'- -GGGUGuGaGAGAGGGCggGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 10602 0.68 0.617048
Target:  5'- cUCCGCcCUC-CUCCCuCCCCGCgCGCc -3'
miRNA:   3'- -GGGUGuGAGaGAGGGcGGGGUG-GUGu -5'
29567 3' -59.9 NC_006151.1 + 10526 0.7 0.481629
Target:  5'- cCCgGCGCgggcgcCUCUCCaCGCCCCGuuCCGCc -3'
miRNA:   3'- -GGgUGUGa-----GAGAGG-GCGGGGU--GGUGu -5'
29567 3' -59.9 NC_006151.1 + 10129 0.73 0.370064
Target:  5'- cCCCuCGCUCUCUcucccCCCGUCCCccucuCCGCGu -3'
miRNA:   3'- -GGGuGUGAGAGA-----GGGCGGGGu----GGUGU- -5'
29567 3' -59.9 NC_006151.1 + 9662 0.7 0.518201
Target:  5'- cCCCGCGCUUcccCUucccgcuucccccUCCGCCCgGCCGCGg -3'
miRNA:   3'- -GGGUGUGAGa--GA-------------GGGCGGGgUGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.