miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 3' -59.9 NC_006151.1 + 65901 0.66 0.75766
Target:  5'- gUCCGC-CUcCUCcCCCucguccucgucgggcGCCCCGCCGCc -3'
miRNA:   3'- -GGGUGuGA-GAGaGGG---------------CGGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 31808 0.66 0.76322
Target:  5'- gCCGCGuccuccucCUC-CUCCCuCCCCGCCGg- -3'
miRNA:   3'- gGGUGU--------GAGaGAGGGcGGGGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 130325 0.66 0.76322
Target:  5'- gCCgCGCGCUCggggagCUCgCGCgCCGCgGCGu -3'
miRNA:   3'- -GG-GUGUGAGa-----GAGgGCGgGGUGgUGU- -5'
29567 3' -59.9 NC_006151.1 + 7654 0.66 0.76322
Target:  5'- cCUCGCGCUCggcgcgcgCUCCgagggCGCCCCAgCCGg- -3'
miRNA:   3'- -GGGUGUGAGa-------GAGG-----GCGGGGU-GGUgu -5'
29567 3' -59.9 NC_006151.1 + 9022 0.66 0.76322
Target:  5'- cCCCGgACcCcCUCCCG-CCCGCCGgGg -3'
miRNA:   3'- -GGGUgUGaGaGAGGGCgGGGUGGUgU- -5'
29567 3' -59.9 NC_006151.1 + 68416 0.66 0.73506
Target:  5'- gCCCGCcC-C-C-CUCGCCCCGCUACAc -3'
miRNA:   3'- -GGGUGuGaGaGaGGGCGGGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 48589 0.66 0.73506
Target:  5'- gCCCgggguGCGC-CUCgucgugCCUGCCgCCGCCGCc -3'
miRNA:   3'- -GGG-----UGUGaGAGa-----GGGCGG-GGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 33735 0.67 0.686547
Target:  5'- aUCACACUCUC-CCCGCgCaCAgaCACAc -3'
miRNA:   3'- gGGUGUGAGAGaGGGCGgG-GUg-GUGU- -5'
29567 3' -59.9 NC_006151.1 + 44868 0.67 0.686547
Target:  5'- --gGCGCcCUCUCUCGCCCgACCuCGg -3'
miRNA:   3'- gggUGUGaGAGAGGGCGGGgUGGuGU- -5'
29567 3' -59.9 NC_006151.1 + 126193 0.67 0.686547
Target:  5'- aCCgGCACa-UCUCgCGCCUgCGCCGCAa -3'
miRNA:   3'- -GGgUGUGagAGAGgGCGGG-GUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 109502 0.67 0.696368
Target:  5'- uUCACAC-CUC-CgCCGCUgCCGCCGCAg -3'
miRNA:   3'- gGGUGUGaGAGaG-GGCGG-GGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 88716 0.67 0.696368
Target:  5'- gCCCuCGgUCUCggcgUCCGCCgCgGCCACGc -3'
miRNA:   3'- -GGGuGUgAGAGa---GGGCGG-GgUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 50676 0.67 0.706139
Target:  5'- gCCGCACc----CCCGCgCCGCCGCGg -3'
miRNA:   3'- gGGUGUGagagaGGGCGgGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 66747 0.67 0.706139
Target:  5'- gCgGCGCUC-CUUCCGCgaCGCCGCGa -3'
miRNA:   3'- gGgUGUGAGaGAGGGCGggGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 39635 0.66 0.71585
Target:  5'- aCCCGCGC-CgggCcccggaccccggUCCCGCUgCCGCCGCGc -3'
miRNA:   3'- -GGGUGUGaGa--G------------AGGGCGG-GGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 132903 0.66 0.722608
Target:  5'- aCCaCGCACUC-CUCgucgcgcauccucaCCGaCCCCcCCACAa -3'
miRNA:   3'- -GG-GUGUGAGaGAG--------------GGC-GGGGuGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 33976 0.66 0.725493
Target:  5'- gCCCgcgcggggACACUCUUUCCCccggaggggcGUCCCGgCGCGc -3'
miRNA:   3'- -GGG--------UGUGAGAGAGGG----------CGGGGUgGUGU- -5'
29567 3' -59.9 NC_006151.1 + 87684 0.66 0.725493
Target:  5'- gCCC-CGCUCccuUCccgCCCGCCCCgacgACCAa- -3'
miRNA:   3'- -GGGuGUGAG---AGa--GGGCGGGG----UGGUgu -5'
29567 3' -59.9 NC_006151.1 + 33765 0.66 0.73506
Target:  5'- aCgACACcCUCcccgCCCGCCCCGuCCGa- -3'
miRNA:   3'- gGgUGUGaGAGa---GGGCGGGGU-GGUgu -5'
29567 3' -59.9 NC_006151.1 + 35778 0.66 0.73506
Target:  5'- aCCCAC-CgaggCUCUCGgCCCGCCAgAg -3'
miRNA:   3'- -GGGUGuGaga-GAGGGCgGGGUGGUgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.