miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29570 3' -58.1 NC_006151.1 + 8477 0.68 0.674062
Target:  5'- -cGGAUGGuCGGUCggacggggcGGGCGGGGAGGGu -3'
miRNA:   3'- guCUUGCC-GUCGGa--------CUCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 133626 0.69 0.653749
Target:  5'- gGGGucGCGGCGGCCgGGGCGGuGGuccGGGu -3'
miRNA:   3'- gUCU--UGCCGUCGGaCUCGCU-CCu--CCU- -5'
29570 3' -58.1 NC_006151.1 + 96895 0.69 0.653749
Target:  5'- -uGAugGGauguGUCUGGGCGGGGcGGGAc -3'
miRNA:   3'- guCUugCCgu--CGGACUCGCUCC-UCCU- -5'
29570 3' -58.1 NC_006151.1 + 41176 0.69 0.653749
Target:  5'- uGGuccuGCGGUGGUCgagggGGGUGGGGGGGGa -3'
miRNA:   3'- gUCu---UGCCGUCGGa----CUCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 45582 0.69 0.643563
Target:  5'- cCGGGACGGC--CCgaggGGGCGGGG-GGAg -3'
miRNA:   3'- -GUCUUGCCGucGGa---CUCGCUCCuCCU- -5'
29570 3' -58.1 NC_006151.1 + 66782 0.69 0.633368
Target:  5'- uCGGGACGGCGGCggcgGcGGCGGGGcccgGGGAc -3'
miRNA:   3'- -GUCUUGCCGUCGga--C-UCGCUCC----UCCU- -5'
29570 3' -58.1 NC_006151.1 + 40566 0.69 0.612982
Target:  5'- gCGGcGGCGGCGGCCgcgGcggagggcucGGCGGcGGAGGAu -3'
miRNA:   3'- -GUC-UUGCCGUCGGa--C----------UCGCU-CCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 26284 0.69 0.602807
Target:  5'- uGGGGCGGaCGGUg-GGGUGGGGGGGGu -3'
miRNA:   3'- gUCUUGCC-GUCGgaCUCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 139603 0.7 0.592654
Target:  5'- -cGAGCGGCGGCCcguccGGGCGcggcuGGGGGc -3'
miRNA:   3'- guCUUGCCGUCGGa----CUCGCu----CCUCCu -5'
29570 3' -58.1 NC_006151.1 + 10010 0.7 0.592654
Target:  5'- gAGAGCGGCGGC---GGCGgucgccgcggccAGGAGGAa -3'
miRNA:   3'- gUCUUGCCGUCGgacUCGC------------UCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 27464 0.7 0.582529
Target:  5'- gGGGGCgGGCGGUC-GAGCGGGGGGu- -3'
miRNA:   3'- gUCUUG-CCGUCGGaCUCGCUCCUCcu -5'
29570 3' -58.1 NC_006151.1 + 3526 0.7 0.582529
Target:  5'- gAGGACaGCAGCgCggGAGCGGGGuccGGAg -3'
miRNA:   3'- gUCUUGcCGUCG-Ga-CUCGCUCCu--CCU- -5'
29570 3' -58.1 NC_006151.1 + 27926 0.7 0.572439
Target:  5'- gAGAACGGauacgaugAGCCgaucgcgcgGGGUGGGGAGGGa -3'
miRNA:   3'- gUCUUGCCg-------UCGGa--------CUCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 48910 0.7 0.562392
Target:  5'- gAGuaccGCGGCcgcuGCCUGAcCGAGGAGGu -3'
miRNA:   3'- gUCu---UGCCGu---CGGACUcGCUCCUCCu -5'
29570 3' -58.1 NC_006151.1 + 4235 0.7 0.552392
Target:  5'- gGGcGCgGGCAGCCgGAGCGGGcAGGGc -3'
miRNA:   3'- gUCuUG-CCGUCGGaCUCGCUCcUCCU- -5'
29570 3' -58.1 NC_006151.1 + 27567 0.71 0.532562
Target:  5'- uGGGACGGgGGCCgggUGGGUGGGcGAGGc -3'
miRNA:   3'- gUCUUGCCgUCGG---ACUCGCUC-CUCCu -5'
29570 3' -58.1 NC_006151.1 + 108682 0.71 0.512993
Target:  5'- cCGGAGCGGCGGCCcGAGCaccuccuGGAGc- -3'
miRNA:   3'- -GUCUUGCCGUCGGaCUCGcu-----CCUCcu -5'
29570 3' -58.1 NC_006151.1 + 33335 0.71 0.493726
Target:  5'- gGGGGCGGgGGCgggGAGaggaGAGGAGGAg -3'
miRNA:   3'- gUCUUGCCgUCGga-CUCg---CUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 9732 0.71 0.484217
Target:  5'- gAGAGgGGaggaaaaaaAGUCUaGAGCGGGGAGGAg -3'
miRNA:   3'- gUCUUgCCg--------UCGGA-CUCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 86631 0.72 0.474796
Target:  5'- gAGcGCGuGUGGCacaUGAGCGAGGAGGc -3'
miRNA:   3'- gUCuUGC-CGUCGg--ACUCGCUCCUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.