miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29572 3' -54.4 NC_006151.1 + 84380 0.66 0.945278
Target:  5'- aUCGcGgcgCgCGGGGACggGcGGGGAGCGGg -3'
miRNA:   3'- -AGCuCa--G-GUUCCUGuaC-CUCCUCGUC- -5'
29572 3' -54.4 NC_006151.1 + 86343 0.66 0.945278
Target:  5'- gUGGGcCCGgacuucuucgGGGACAUGcggcucucggacGAGGAGCGGc -3'
miRNA:   3'- aGCUCaGGU----------UCCUGUAC------------CUCCUCGUC- -5'
29572 3' -54.4 NC_006151.1 + 8731 0.66 0.945278
Target:  5'- cUCG-GUCCGAGGAg--GGGGGuGCc- -3'
miRNA:   3'- -AGCuCAGGUUCCUguaCCUCCuCGuc -5'
29572 3' -54.4 NC_006151.1 + 23012 0.66 0.945278
Target:  5'- gUGGGggcgCgGGGGugGUGGAGGcggcgaagaAGCGGg -3'
miRNA:   3'- aGCUCa---GgUUCCugUACCUCC---------UCGUC- -5'
29572 3' -54.4 NC_006151.1 + 5028 0.66 0.940657
Target:  5'- cCGGGgCCGGGGcCggGGAGGccgcGGCGGa -3'
miRNA:   3'- aGCUCaGGUUCCuGuaCCUCC----UCGUC- -5'
29572 3' -54.4 NC_006151.1 + 100700 0.66 0.940657
Target:  5'- gCGAGaccuggaCCGAGG-CGcGcGAGGAGCAGg -3'
miRNA:   3'- aGCUCa------GGUUCCuGUaC-CUCCUCGUC- -5'
29572 3' -54.4 NC_006151.1 + 121685 0.66 0.93068
Target:  5'- gCGGG-CCGAcccGGcCAUGGcGGAGCGGc -3'
miRNA:   3'- aGCUCaGGUU---CCuGUACCuCCUCGUC- -5'
29572 3' -54.4 NC_006151.1 + 33389 0.66 0.925321
Target:  5'- gUCGGG-CgGAGGACAgaggcGGAGaGGGCGa -3'
miRNA:   3'- -AGCUCaGgUUCCUGUa----CCUC-CUCGUc -5'
29572 3' -54.4 NC_006151.1 + 84671 0.66 0.925321
Target:  5'- cUCGAGgCCGAGG---UGGAcGAGCAGc -3'
miRNA:   3'- -AGCUCaGGUUCCuguACCUcCUCGUC- -5'
29572 3' -54.4 NC_006151.1 + 33150 0.67 0.919715
Target:  5'- gCGAGUgCGAGG-CG-GGucGGGGGCGGg -3'
miRNA:   3'- aGCUCAgGUUCCuGUaCC--UCCUCGUC- -5'
29572 3' -54.4 NC_006151.1 + 10427 0.67 0.907763
Target:  5'- gCGGGUgggCCGAGGccgGCGgggagGGAGGAGgAGg -3'
miRNA:   3'- aGCUCA---GGUUCC---UGUa----CCUCCUCgUC- -5'
29572 3' -54.4 NC_006151.1 + 127904 0.67 0.907763
Target:  5'- cCGAGcUCGGGGGCcccucGGGGAGCGGg -3'
miRNA:   3'- aGCUCaGGUUCCUGuac--CUCCUCGUC- -5'
29572 3' -54.4 NC_006151.1 + 88280 0.67 0.901421
Target:  5'- cCGAGaccgccgCCGGGugguaGACGUGGGGGcGCAGg -3'
miRNA:   3'- aGCUCa------GGUUC-----CUGUACCUCCuCGUC- -5'
29572 3' -54.4 NC_006151.1 + 30747 0.67 0.901421
Target:  5'- -gGAGUgCCGcGGGCggGGcGGGGGCAGc -3'
miRNA:   3'- agCUCA-GGUuCCUGuaCC-UCCUCGUC- -5'
29572 3' -54.4 NC_006151.1 + 18037 0.67 0.894839
Target:  5'- cCGAGUCguccUggGGGCGcagcGGGGAGCGGg -3'
miRNA:   3'- aGCUCAG----GuuCCUGUac--CUCCUCGUC- -5'
29572 3' -54.4 NC_006151.1 + 10384 0.67 0.894839
Target:  5'- -gGGGUCgGGGGGaagGGAGGGGgGGg -3'
miRNA:   3'- agCUCAGgUUCCUguaCCUCCUCgUC- -5'
29572 3' -54.4 NC_006151.1 + 73024 0.67 0.894168
Target:  5'- gCGAGgcCCAGGGAUuggcgguggcgcgGUGGGGGugcGCGGg -3'
miRNA:   3'- aGCUCa-GGUUCCUG-------------UACCUCCu--CGUC- -5'
29572 3' -54.4 NC_006151.1 + 33026 0.68 0.880966
Target:  5'- cCGuuggCCGAGGACGacggGGAGGGGgGGa -3'
miRNA:   3'- aGCuca-GGUUCCUGUa---CCUCCUCgUC- -5'
29572 3' -54.4 NC_006151.1 + 29447 0.68 0.880966
Target:  5'- gCGGGgagaGGGGACGcGGAGGgAGCGGg -3'
miRNA:   3'- aGCUCagg-UUCCUGUaCCUCC-UCGUC- -5'
29572 3' -54.4 NC_006151.1 + 120050 0.68 0.880966
Target:  5'- gCGuGcUCCAcGGGCAgcccgUGGAGGGGCGc -3'
miRNA:   3'- aGCuC-AGGUuCCUGU-----ACCUCCUCGUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.